Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06245 ATGGAGAACTGCGAAATAGTTGAGAAAGTTGGAGAAGGAACCTACGGAAAAGTCTACAAAGCCAAAGAAATCTCCACCGGCCAAATCGTCGCACTTAAAGAAACTCGTCTGGAAATGGACGAAGGTGTTCCTTCTACAATACTTCGTGAAGTTTCTCTCCTGAAAATGCTCTCTCAATCTCCCTACATCGTTCGTCTCATCAAGGTCGTTGATAAACCCCCCAAACTCCTCTATCTCGTCTTCGAGTATCTCGACACCGATCTCAAGAAATACATGAACACTTTTCGCCAACGCTATGACCCTGAACCGTTGCCTGATTCCCTTATTCAGAGTTTTTTGTTTCAGCTGTGTAAAGGTGTTGCTCATTGTCATAGTCATGGTGTTCTTCATCGTGATTTGAAACCCGATAATTTGTTGCTTGATCAACAGAAATCTATTTTGAAAATCGCTGATTTTGGTCTCGGAAGAGTTTGTACCTTTCGTCTTAAGAGTTATACTCCTGAGATTGTTACTCTTGGGTATAGAGCTCCTGAGGTTTTGCTTGGATCCACTACTTACTCTACTGGTGTTGATATCTGGTCTGTTGGATGCATCTTTGCTGAAATGGTGAGAACTGTGACTTTGTTTCCAGGGGCTTCTGAATTTGAGCTTCTTGTTAGCATATTCAGAAATGATGACAAAATTAGAAGCGTCATTTTACATACCTGGTGA 711 0.4149 MENCEIVEKVGEGTYGKVYKAKEISTGQIVALKETRLEMDEGVPSTILREVSLLKMLSQSPYIVRLIKVVDKPPKLLYLVFEYLDTDLKKYMNTFRQRYDPEPLPDSLIQSFLFQLCKGVAHCHSHGVLHRDLKPDNLLLDQQKSILKIADFGLGRVCTFRLKSYTPEIVTLGYRAPEVLLGSTTYSTGVDIWSVGCIFAEMVRTVTLFPGASEFELLVSIFRNDDKIRSVILHTW 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06245 236 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Trre2g06245 236 Pfam Protein kinase domain 5 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g06245 236 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre2g06245 236 SUPERFAMILY Protein kinase-like (PK-like) 2 224 IPR011009 -
Trre2g06245 236 SMART serkin_6 4 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g06245 236 FunFam Cyclin-dependent kinase 4 1 85 - -
Trre2g06245 236 ProSiteProfiles Protein kinase domain profile. 4 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g06245 236 FunFam Mitogen-activated protein kinase 84 225 - -
Trre2g06245 236 Gene3D Transferase(Phosphotransferase) domain 1 87 234 - -
Trre2g06245 236 PANTHER CELL DIVISION PROTEIN KINASE 2 222 - -
Trre2g06245 236 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06245 Trre-Chr2 66869954 66871430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06245 1 223 Core Cell Cycle Gene Families AT3G54180 68.240 1.11e-104 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Trre2g06245 Pkinase 1.6e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06245 K07760 - sspl:121759261 320.857