LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g06240	ATGAGTTTGAGCAAACAACATGCACCTAAGTGTTACGACGATTTGTCACTCGTGAAGGCTGGCACTGCCGGTGGATGCTTTAAAGTAAGGGTTTTGAAAAAATGGACCGTCGATGATGTTCTGCTGCCTGGAAAAATTGCTTCTGTTGATATGATTTTAATGGATAAAAATGGTAATATGATCCAGGCTTCGATTCCTGAGGTTTATCGTTCTTTGTTTGACTACCAGTTCGTTGAGGGGAACATCTATGTGATTTCTAAATTGTCTGTTAGGTACAGCATTGGTCATATGTTTGCGAGTTACCAGAAACATATGTTGGAATTTATTCTTGGAACTCAGGTTAGGCTTGCTTGGGCTTATGGAATGCCAATAACTGGTGGCTCCTTTGATGACAACGTAGACTACACCAGCAAGCGATATGTGGTTGACGTCATTGGAGTGATTACTTACATCAGACATGACAAAATATTTTTCCTCGATGGAGCTTGCACTAAGAAACTTACTTTGAAACTCACCGATAACAGTGATTTTACAAATTCATTTGAGTGCGAACTTACTGGAGACATGGTTGATAAATTCCGTGACAACATGAAAAATATACCCTTGGGTTTACCTATCATTGTTTTGCAATCTGCTAGGATTACTGAGAACCAAGGAAAAAGAATTGTTCATAATGTTGATGGTGTGACCAAGCTATATGTTAATCCACAGTTTCATGAGGCAAAGAAGTTTAGGAGAGGGTTGGTGATTGCTTTGAACAAAACAAAGAAGAAACTTGGTATTCCAACCATTGATAAACCTGTGGGATTTAACTTGGAGACTACTTATCAATGTAAGACAATTTCTCAGTTTAGGGAAGATCCGGAACTTGGTATTTTTGTCATCAATGCTCGATTGGCTGATATGAGTGGTGTAAATGCTTGGTGGTACCCTGTCTGTCGCTGTGACATTATCATTGATTCTTATCTTGGTTCATTTTTCTGTGATAAGTGCCATGCTACAGATTTTCAACCTTTGCTCAAGTATAGGGCCAAACTGGCCATTCAGGATCAAACTGGTAGACTAAACCTTGAAGCTTTTGATCATGTTCTTCTCCCTGTTGCTACTGTCAACCCGAAAAAGCCGGGAATTCCTAGATACTATTTCCCCCGTGCTTTTGATCCTATAACTGGAAAGAGTATAATGTATATTGTTGAGAAAAAGAAACATAATCCAACTCTGAATGGTGAGGTACATGAGCTGCTTTGTGTTTCTGATGATCCAAAGGTCATAAATCACTTTGTTAAGGAAGGTTTTTGCAATCCCCCCTCAAAGCTGCATTTCAACTTTGTCAATGAAGAATGCAATCTAATGAATGCAAAGATGCAGGACTCTGTTGTAACTAACACAAAGAAACTTGTGCATGACTACATGGTTCCAACTGCTTCAACATCTGTGACATGGGAGGCAAGTGAAAGTTCTAATGGTAGTTCGCGATTATCGACCTTTCAAGGTAGAGGTTTCAGATCTGTTCGTGCTAGATTCTCCTCATAA	1533	0.3933	MSLSKQHAPKCYDDLSLVKAGTAGGCFKVRVLKKWTVDDVLLPGKIASVDMILMDKNGNMIQASIPEVYRSLFDYQFVEGNIYVISKLSVRYSIGHMFASYQKHMLEFILGTQVRLAWAYGMPITGGSFDDNVDYTSKRYVVDVIGVITYIRHDKIFFLDGACTKKLTLKLTDNSDFTNSFECELTGDMVDKFRDNMKNIPLGLPIIVLQSARITENQGKRIVHNVDGVTKLYVNPQFHEAKKFRRGLVIALNKTKKKLGIPTIDKPVGFNLETTYQCKTISQFREDPELGIFVINARLADMSGVNAWWYPVCRCDIIIDSYLGSFFCDKCHATDFQPLLKYRAKLAIQDQTGRLNLEAFDHVLLPVATVNPKKPGIPRYYFPRAFDPITGKSIMYIVEKKKHNPTLNGEVHELLCVSDDPKVINHFVKEGFCNPPSKLHFNFVNEECNLMNAKMQDSVVTNTKKLVHDYMVPTASTSVTWEASESSNGSSRLSTFQGRGFRSVRARFSS	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g06240	510	CDD	RPA1_DBD_B_like	143	246	-	-
	Trre2g06240	510	Gene3D	-	128	248	IPR012340	-
	Trre2g06240	510	Gene3D	-	269	411	IPR012340	-
	Trre2g06240	510	CDD	RPA1_DBD_A_like	28	114	-	-
	Trre2g06240	510	SUPERFAMILY	Nucleic acid-binding proteins	20	115	IPR012340	-
	Trre2g06240	510	SUPERFAMILY	Nucleic acid-binding proteins	137	245	IPR012340	-
	Trre2g06240	510	Gene3D	-	15	116	IPR012340	-
	Trre2g06240	510	SUPERFAMILY	Nucleic acid-binding proteins	277	366	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g06240	Trre-Chr2	66831167	66833807	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g06240	53	361	Core DNA Replication Machinery Family	AT5G08020	20.679	7.62e-08	53.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g06240	-		-	tpra:123922259	471.855