Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06224 ATGGCAGCATTCAACGTTACAGCACCGCCACTTTTCTCACTGTCAAATGTTGCAGATAGCAGCAGAGGCATAAGAAGAATCCGAGCTCTGAACCCTAACCCTAAAAGTATCACCGGCATCGGATTTGGCCGTGAGAGAGGTGTGAAACTGCCACTGCCACTACTACTACGAAAACAACAACAGAACATTAGTATTGCTGGTACGAATGCTGCTGCGAGCGTGCGAGTGAGGGCGGGCAGTGCTGCTGAAGAGGAAGTAACAGTACAGTCAAAAGTGACTCACAAAGTATACTTTGATGTAAGTATTGGAAATCCTGTTGGAAAGTTGGTTGGAAGGATTGTGATTGGACTCTTTGGTGACGATGTACCCCAAACTGCTGAGAACTTCCGTGCCCTTTGCACCGGTGAGAAGGGTTTTGGCTACAAGTCGTCTGCCTTCCATCGTGTCATCAAGGATTTTATGATTCAAGGAGGCGATTTTGACAAAGGAAATGGGACCGGAGGCAAAAGCATATATGGCCGTACTTTCAAAGACGAGAATTTTAAATTGTCTCATACTGGACCAGGAGTAGTTAGCATGGCAAATGCAGGTCCCAACACTAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACCCAGTGGCTGGATAAGAAACATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCGCAGGAGACAGATCGTGGCGATCGTCCCCGAAAGAAGGTGGTTATCAGTGAATGTGGTGAGCTTCCAATTGCTTGA 786 0.4618 MAAFNVTAPPLFSLSNVADSSRGIRRIRALNPNPKSITGIGFGRERGVKLPLPLLLRKQQQNISIAGTNAAASVRVRAGSAAEEEVTVQSKVTHKVYFDVSIGNPVGKLVGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKSSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTQWLDKKHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVVISECGELPIA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06224 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 IPR002130 GO:0000413|GO:0003755
Trre2g06224 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 217 232 IPR002130 GO:0000413|GO:0003755
Trre2g06224 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 158 IPR002130 GO:0000413|GO:0003755
Trre2g06224 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 204 IPR002130 GO:0000413|GO:0003755
Trre2g06224 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 216 IPR002130 GO:0000413|GO:0003755
Trre2g06224 261 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 107 257 IPR002130 GO:0000413|GO:0003755
Trre2g06224 261 SUPERFAMILY Cyclophilin-like 91 258 IPR029000 -
Trre2g06224 261 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 95 258 - -
Trre2g06224 261 FunFam Peptidyl-prolyl cis-trans isomerase 81 261 - -
Trre2g06224 261 CDD cyclophilin_ABH_like 94 256 - -
Trre2g06224 261 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 110 256 IPR002130 GO:0000413|GO:0003755
Trre2g06224 261 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 141 158 IPR020892 GO:0003755|GO:0006457
Trre2g06224 261 Gene3D - 80 260 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06224 Trre-Chr2 66711465 66712563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06224 111 254 U-box Gene Family AT5G67530 49.655 4.38e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06224 K03768 - gmx:100777088 352.058