Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06214 ATGTATCGTCCTCCTTCTTCTTCCGGTTCTTCCTCCTCCTCTTCTTCTCAGCAACAACAGAGCTCCATCAGCCAAACTGGACTTACAAGGTACGATTCAGCACCAGGTTCTCTCCTCGCCAGCACTGTTGATGCCGTCATAGGAGGAGGAGGATCGCGTCTTCTCCCAGCTGGAACGGGAGGAGGACATCATTATTTCTCCGGAGACTCTAGCCAACAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGAGATCTTCTAATAATGCTTACGACGGCTTTGATGGATCATCTTTGCTCCGTCAAAAAAGCTCTCCCGCTGGCTTCCTAAACCATCTAGCCACTCTCAATCATAATAATAGTGCGGGGTTCACAATCACAAGGGGGGGAAATGGAGGGTCAAGATTGAAGTCTGAATTGAGCTTCACAGGCGGAGGAGGTGGAGGTGGAGGACAAGAATGTCTTTCTCGAATATCCGAAAATGGTGTTGACTATGCAAATGGATCGTTGCACAATAATAGTACCAGTAGCTGGGGTGGACCTGATAATAACAATAACAATAATTCAAATTCCATAGTATTTTCTTCCTCTGCTGCCCAAACTAACAATAGTAATAAGCGTTCTAGTAGAACTGACAACGAGGACCCCGATCTTCTTCTACATTGCCTCACTGCCCTCGAAACTCAGTATAGTCTCCCGCAAACTTCTTTGGAAATGGACAAGCTTATGCATAATATTCCCCAAGATTCCGTCCCTTGTAAAATCCGTGCCAAGCGTGGCTGTGCCACTCATCCCCGTAGCATTGCTGAACGGGAGAGAAGAACTAGAATAAGTGGCAAATTGAAGAAATTGCAGGACCTTGTACCTAATATGGATAAGCAAACAAGTTATTCTGACATGCTGGATTTGGCCGTTCAACATATCAAAGGTCTTCAAACTCAAGTTCAGAAGCTTCACGAAGATCTTGAGAATTGCACTTGCGGATGCAAACAAAGTACATAA 1005 0.4537 MYRPPSSSGSSSSSSSQQQQSSISQTGLTRYDSAPGSLLASTVDAVIGGGGSRLLPAGTGGGHHYFSGDSSQQQQQQQQQQQQQQRSSNNAYDGFDGSSLLRQKSSPAGFLNHLATLNHNNSAGFTITRGGNGGSRLKSELSFTGGGGGGGGQECLSRISENGVDYANGSLHNNSTSSWGGPDNNNNNNSNSIVFSSSAAQTNNSNKRSSRTDNEDPDLLLHCLTALETQYSLPQTSLEMDKLMHNIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLENCTCGCKQST 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06214 334 MobiDBLite consensus disorder prediction 54 104 - -
Trre2g06214 334 FunFam Transcription factor bHLH130 family 263 332 - -
Trre2g06214 334 Pfam Helix-loop-helix DNA-binding domain 267 313 IPR011598 GO:0046983
Trre2g06214 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 312 IPR011598 GO:0046983
Trre2g06214 334 Gene3D - 263 332 IPR036638 GO:0046983
Trre2g06214 334 SMART finulus 268 318 IPR011598 GO:0046983
Trre2g06214 334 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 328 - -
Trre2g06214 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 326 IPR036638 GO:0046983
Trre2g06214 334 MobiDBLite consensus disorder prediction 65 104 - -
Trre2g06214 334 CDD bHLH_AtbHLH_like 267 319 IPR045239 -
Trre2g06214 334 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06214 Trre-Chr2 66630303 66632880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06214 27 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 43.923 3.70e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g06214 HLH 9.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06214 - - mtr:11440758 475.707