Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06209 ATGATGATTCTAAACTCTGAAATAAATGGGAGCTATGAAACATCATGTTCAACTGAAATAAATAATTTGGGAAAACGTGCGAGGTATGAAGCAGAGGATGATGATGATGCAGGAGGGTCTCAAAAGTTCAAAGGTATTGTTCCTCAACAAAACGGACATTGGGGTGCACAAATATACGCAAACCACCAAAGAATATGGTTAGGGACATTCAAATCCGAAAGAGATGCTGCCATGGCTTATGACAGCGCCACCGTGAAGCTTAGAAGCGGAGAAAGCCATAGAAATTTTCCATGGAATGACCAAACAGTTCAAGAACCTTTGTTTCAAAGTCATTATAGCATGGAAACTATTTTGAGCATGATTAAGAATGGAACCTACCAATCTAAATTTGCCACTTTTCTTAGGAACCAAACCCAAAGTGGCATTGTTGGGGTAAAGAAGGGTGGTGGACAACAATTTTGTTGCACACAACTTTTTCAGAAAGAATTAACACCTAGTGATGTTGGTAAACTAAACAGGCTTGTCATCCCCAAAAAACATGCAGTTACCTATTTTCCTTTGGTTTGCAGTGACAATAATAATAATAATAATAATATAACTGCAAACGACGATAACTATTGCACCAGCGATGTGGAGCTTGTGTTTTACGACAAACTCATGCGATTGTGGAGGTTTCGATACTGTTATTGGAAGAGCAGTCAAAGCTACGTCTTCACTAGAGGATGGAATCGATTTGTGAAGGATAAGAAATTAAAGGCCAAAGACACCATTGTGTTTTATATGTGTGAACCTATAAATTTCACAAAAAGGGGTGATCATGGACAACCATTTACATTGATTGATGTAATATATAATAATAATGCTGGTCATGGAAAAAAACACTCATCTGAAGATCATAATAATAAGGGAGAAGATGCCAAACAGGTTTTGGAAAAAAGGTTAATTTCCAATGAAGTGGATGGTGAAGAGACTCAAGGTAGAATAGATTTAAATGTATTTCATTCCACACATAATAATAATGCAGATAGAGGATTCAAGCTCTTTGGCGTAAATATCAGCTGA 1062 0.3691 MMILNSEINGSYETSCSTEINNLGKRARYEAEDDDDAGGSQKFKGIVPQQNGHWGAQIYANHQRIWLGTFKSERDAAMAYDSATVKLRSGESHRNFPWNDQTVQEPLFQSHYSMETILSMIKNGTYQSKFATFLRNQTQSGIVGVKKGGGQQFCCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPLVCSDNNNNNNNITANDDNYCTSDVELVFYDKLMRLWRFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIVFYMCEPINFTKRGDHGQPFTLIDVIYNNNAGHGKKHSSEDHNNKGEDAKQVLEKRLISNEVDGEETQGRIDLNVFHSTHNNNADRGFKLFGVNIS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06209 353 Gene3D - 155 275 IPR015300 -
Trre2g06209 353 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Trre2g06209 353 Pfam B3 DNA binding domain 159 262 IPR003340 GO:0003677
Trre2g06209 353 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 40 352 IPR044800 GO:0003700
Trre2g06209 353 ProSiteProfiles B3 DNA-binding domain profile. 159 283 IPR003340 GO:0003677
Trre2g06209 353 SMART B3_2 159 272 IPR003340 GO:0003677
Trre2g06209 353 SMART rav1_2 42 103 IPR001471 GO:0003700|GO:0006355
Trre2g06209 353 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Trre2g06209 353 ProSiteProfiles AP2/ERF domain profile. 42 97 IPR001471 GO:0003700|GO:0006355
Trre2g06209 353 CDD B3_DNA 158 261 IPR003340 GO:0003677
Trre2g06209 353 FunFam AP2 domain-containing protein RAP2.8 41 98 - -
Trre2g06209 353 Gene3D AP2/ERF domain 41 98 IPR036955 GO:0003700|GO:0006355
Trre2g06209 353 SUPERFAMILY DNA-binding pseudobarrel domain 157 267 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06209 Trre-Chr2 66590319 66591380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06209 37 352 RAV Transcription Factor Family AT1G50680 48.795 3.16e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g06209 B3 7.7e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06209 K09287 - gmx:102660503 377.481