LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g06188	ATGCGAGATAACACCCTACCCATCCTCTCATTCCACCTTAAATCTCGCCACCGATGCAACCACTTGTACCAAGATTTTGTTTATCCTGCAATTACAAGGGGGAAAGTGGAAAACCTAATCATCGATCTCTCCCACTTCAACACACTGCCGCCTTCTGTAGTTCTTCTAAGCACACTCTCGATTCTCAAACTGAAGACAATAACGTTTAACGAAGGCTTTCCAACTGTTGTTGATCTTCCCTCGCTCAAAGTCCTTCGCTTGGAAGGAGTCACTTTCAAATACATTGCGGATCCCCATAAACTTCTATCTGGCTGTCCCATTCTACACGAGTTGGAAATTAGTTATTTACAAATACAGATCCATAATATGAATTTGCTAACAAAAAAACCTCCGAGGCCTCCTCCTCCTTTAGGTATTGCAATATCCAATTTGGTAAGAGCTAACATTATTTTCAGTGATGATGATATGATTGGACTTGAGTGGCTTCATAATGTGGAGCATCTCCACATACAACTGAACACGACGCCACCTACTATACGCGGTGTGTTTTACAATTTAACTCACCTCGAGCTTATATTCAACTTTCACCGTGATGAACAATACGCACTTTTCAAGTGGAGGTGGCTTGCAAAACTGCTTCAAAATACACCCAACCTTCAAACTCTTATCATTCATCAACTCTCTAAGGTTGAAGACGATGAACGACGCTTACCTATTAAACGATGGGAATGGGAGTGGGAGGATCCAGAAATTGAAAACAATGAATGGAATTCAGGACAACAACATTTCATTTTTTCAGCAGATGGGCAAGAACACCTCCCTTTTGTTTCAATTGTCCTGGAATGGATGCTTAAAGTCAGTCTCCTCGGTTTATTCATTAATCAAATTAAGAATGCCTTGAGTTCTCAGCAAAAGCCACTCATGCCACAAAAACATTTTTCCAGCAGATGGGCAGCAAGAACACCTCCCTTTTGTTTCAACCGTCCTGTGAAAGTTCCCTTGACTGAACCCTGTTCAAGTCTTGAATATGGTACAAAAGCATCTTGTGGATATGGAGGGGGTAAGTACAACTTTGATCCAAAAAAGCTGCAGCCAGTCCTTTATCTTGCTTTAGTTTGCATGATATTTATTGATGAAATAGATGCAATTGCCCCTCCAAGGAAAGATGGGGTTGAAGTGCTATCTAAAAGATTGGTTGGAACCTTGTTGGAACTGATGGATGGAATTAGTATAAATGGAGGATTAGTTGTAATTGCTGCTACAAATAGGCCTGACCATATTGATCCAGCTCTCAGACAGGGTGGAAGATTTGACAAGGATATTGAAATTGCCAATTGGTAA	1341	0.4087	MRDNTLPILSFHLKSRHRCNHLYQDFVYPAITRGKVENLIIDLSHFNTLPPSVVLLSTLSILKLKTITFNEGFPTVVDLPSLKVLRLEGVTFKYIADPHKLLSGCPILHELEISYLQIQIHNMNLLTKKPPRPPPPLGIAISNLVRANIIFSDDDMIGLEWLHNVEHLHIQLNTTPPTIRGVFYNLTHLELIFNFHRDEQYALFKWRWLAKLLQNTPNLQTLIIHQLSKVEDDERRLPIKRWEWEWEDPEIENNEWNSGQQHFIFSADGQEHLPFVSIVLEWMLKVSLLGLFINQIKNALSSQQKPLMPQKHFSSRWAARTPPFCFNRPVKVPLTEPCSSLEYGTKASCGYGGGKYNFDPKKLQPVLYLALVCMIFIDEIDAIAPPRKDGVEVLSKRLVGTLLELMDGISINGGLVVIAATNRPDHIDPALRQGGRFDKDIEIANW	446

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g06188	446	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	372	443	IPR027417	-
	Trre2g06188	446	PANTHER	AAA-FAMILY ATPASE	373	443	-	-
	Trre2g06188	446	Pfam	Leucine Rich Repeat	81	106	IPR013101	-
	Trre2g06188	446	Pfam	ATPase family associated with various cellular activities (AAA)	373	443	IPR003959	GO:0005524\|GO:0016887
	Trre2g06188	446	Gene3D	Ribonuclease Inhibitor	27	236	IPR032675	-
	Trre2g06188	446	Gene3D	-	355	444	IPR027417	-
	Trre2g06188	446	SUPERFAMILY	RNI-like	19	230	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g06188	Trre-Chr2	66435101	66439582	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g06188	370	444	Calmodulin-binding Proteins	AT3G56690	64.000	3.16e-23	101