Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06172 ATGCCTCAGCTTCGTAGTGGAGTCCGGCGTCGTCGTGCTGCTGCGCCTGTAACAACCAACAAACAATCGGAACAACCGCCACCTAAGAAAAACGTGGCGGCAAGAGGTAGACCGAGAACTAGATTGGCTGCCAAGAAAAAATCTGAGCCGTTGATTGAGATATTAGAACCTGATACTTTCGTTGAACCTCCTAAAGAGAACGTTGTTGTTGTTATTGAAGAAGAAGAAGAAGAAGGTGTTGGTGTTATGGGTGATGAAAGAGTTGGTGTTAGTGGTAATAAGGATAAAGGTGTTGCTGGTGGTGTTCCTGAAGAGGATGTCAACTCTCCACCTCTTCCAGAAAGGGTTCAAGTAGGAGGATCGCCTCTCTACAAGGTAGAAAGGAAACTTGGTAAAGGTGGATTTGGTCAAGTTTTTGTTGGCCGTCGTGAGCGCGCAAATGCTCCCGGAGCTTTGGAAGTTGCTCTGAAATTTGAACATAGAAACAGTAAAGGTTGCAATTATGGCCCTCCTTATGAGTGGCAAGTATACAACACCCTTGGTGGTAGTCATGGAATACCTAAAGTACACTATAAAGGAAGACAAGGAGATTATTATGTGATGGTTATGGACATTCTTGGTCCAAGTTTGTGGGATGTATGGAATACCTCAGGACAGTCGATGTCTCCTGAAATGGTCTCATGTATAGCTGTTGAGTCGTTATCCATACTTGAGAAGTTGCACGCTAAAGGTTATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAACCCAGCACAGCACAGGAGAAGAAATTGTTTCTTGTTGACCTTGGTTTAGCAACAAAGTGGAAAGATTCGTCAAATGGAAAGCATACTGAATACGATCAACGCCCTGACATGTTTAGAGGGACTGTTCGATACGCTAGCGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCACTTGCATACACACTAATCTTTCTTCACAGGGGCCGATTGCCATGGCAAGGTTTTCAGGGTGATGGCAAATCGTTCCTCGTTTGCAAAAAGAAAATGGGAACATCTCCTGAGATGCTATGCTGCTTTTGCCCTGCACCTTTTAAGCAATTTCTCGAGACTGTGGTGAACATGAAGTTTGATGAAGAACCTAACTACTCTAAGCTAATATCCTTGTTTGATGGTATGCTCGGACCTAATCCTGCATTGCGACCAATTAATACCGAAGGTGCTCAAAAGGTCGGGCAAAAGCGGGGTAGATTGAACGTTGATGCAGATGATGAACAGCCCAAAAAGAAGGTTCGTTCAGGGATTCCTGCTTCTCAATGGATTTCAGTTTACAATGCTAGACAACCGATGAAACAAAGGTATCACTACAATGTGGCTGATGCAAGATTAGCACAGCATATTGAGAGAGGGATTGCAGATGACCTTCTTATTAGTTGTGTATCATGTTGTTCCAATCTATGGGCACTTATCATGGATGCTGGAACTAATTATACCGCTCAAGTTTACAAATTATCACCATTATTTTTACACAAGGAATGGATCTTGGAACAATGGGATAAGAACTTCTACATTACTTCTATTGCAGGAGCCAACAATGGCAGCTCTGTCGTTGTGATGTCAAAAGGTACGCGGTACACTCAACAATCATACAAAGTAAGCGAATCTTTCCCCTACAAATGGATCAACAAGAAGTGGAAAGAAGGTTTTCACGTCACCTCAATGGGTACTGCTGGAAATCGCTGGGGTATTGTCATGTCTCGCAATGCTGGATTCAGTGATCAGGTGGTGGAACTTGATTTTCTCTATCCAAGTGAAGGCATCCATAAACGTTGGGATAATGGTTATAGGATTACAGCAACTGCAGCTACATTGGATCAATCTGCGCTTATATTAAGTATCCCTAGGAACAGACCCGGAGATGAAACTCAGGAAACTCTGCGTACATCTCAATTTCCCAGCGCTCATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCCCATTTGTGCTATGGGCGCACAGTTTGCTGA 2043 0.4317 MPQLRSGVRRRRAAAPVTTNKQSEQPPPKKNVAARGRPRTRLAAKKKSEPLIEILEPDTFVEPPKENVVVVIEEEEEEGVGVMGDERVGVSGNKDKGVAGGVPEEDVNSPPLPERVQVGGSPLYKVERKLGKGGFGQVFVGRRERANAPGALEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGDYYVMVMDILGPSLWDVWNTSGQSMSPEMVSCIAVESLSILEKLHAKGYVHGDVKPENFLLGQPSTAQEKKLFLVDLGLATKWKDSSNGKHTEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGFQGDGKSFLVCKKKMGTSPEMLCCFCPAPFKQFLETVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNVDADDEQPKKKVRSGIPASQWISVYNARQPMKQRYHYNVADARLAQHIERGIADDLLISCVSCCSNLWALIMDAGTNYTAQVYKLSPLFLHKEWILEQWDKNFYITSIAGANNGSSVVVMSKGTRYTQQSYKVSESFPYKWINKKWKEGFHVTSMGTAGNRWGIVMSRNAGFSDQVVELDFLYPSEGIHKRWDNGYRITATAATLDQSALILSIPRNRPGDETQETLRTSQFPSAHVKEKWSKNLYLAHLCYGRTVC 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06172 680 Pfam Protein kinase domain 124 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g06172 680 ProSitePatterns Protein kinases ATP-binding region signature. 130 157 IPR017441 GO:0005524
Trre2g06172 680 MobiDBLite consensus disorder prediction 1 49 - -
Trre2g06172 680 Gene3D Transferase(Phosphotransferase) domain 1 108 439 - -
Trre2g06172 680 PANTHER CASEIN KINASE-RELATED 124 642 - -
Trre2g06172 680 MobiDBLite consensus disorder prediction 85 118 - -
Trre2g06172 680 SUPERFAMILY Protein kinase-like (PK-like) 124 402 IPR011009 -
Trre2g06172 680 ProSiteProfiles Protein kinase domain profile. 124 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g06172 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Trre2g06172 680 CDD STKc_CK1 124 394 - -
Trre2g06172 680 FunFam casein kinase 1-like protein HD16 95 436 - -
Trre2g06172 680 SMART serkin_6 124 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06172 Trre-Chr2 66307706 66312286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06172 123 277 EF-hand Containing Proteins AT4G21940 27.848 1.56e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Trre2g06172 Pkinase 1.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06172 - - gmx:100819969 1110.52