Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06169 ATGGCAACATATGAAGAGGTTGTAGACAATCCCAAGCTCTTCATGCTTAGCTTGGAGAAGCTTCATGCTCTAATGTGCACCAAGTTTATGATTCCCATTATTGGTGGAAGGGAATTGGATTTACATCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAAATCATAAAAGATAGAAAATGGAAAGAAATAACACTAGTTTTCAATTTTCCATCGACGGCTACTAATGCTTCTTTTGTGCTGCGGAAGTACTATACTTCATTACTCTACCATTATGAACAAATCTATTATTTTAAAGCTCGTAACTGGACACATACAACTTCTGATGTTTTGCAGAGTCAATCATCCATCCCAGTTCCTGCTCCAAAGATGCAGATTTTGCATTCTTCACCCCAAATTCAACCAGCTGTTTTTCAACAGTTAAATGTCAATGCTGCTAGACTGCCTCAAGCAATGGCATCATCTTCGGCAGGGTCATCGGTTGTTGGGGTCATTGATGGGAAATTTGACAGTGGTTATCTGGTTACTGTCACAATTGGTTCGGAGAAACTCAAAGGCGTCCTTTATCAAGCACCACAAAATGCCGTGTTGCCAACATCCCACCACAGTGCTTCTGCTAATAACAACAATGTGACTGCCTCGGTTGGTGTCCATCGTCGCCGACGCAGGAAAAAGTCAGAAATGAAAAAGAGAGATCCTGCTCACCCAAAGCCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAACATGCAAGGCTAAAGCCTCTTAACCAAGGGAGGGACAGAGAGATCAGTAGGACCATTGGTGAACTCTGGAACAAGTTAAACGACTCCGAAAAAGCAGTTTATCAAGATAAAGCTGTGAAGGACAAGGAGAGGTACCGAACAGAGATGGAGTATTACCGGGAGAAGTTGAAGATGGATCAGGTGATCAGCGATGCCGTGCCACTTCAACAGAGACTTCCCGAACCAGATACGGACATGTTGAACGCTGAGGCGGATTCTCTTCAAACACCGGAGGAGAGCAGTTCGGGTGGAAGTGATGACTATGAAGATGACAAGGCAATGGAGAAAGATTATAGTATGGATGCATTGCCTGTTATAGGAGTTGGAGGTGAATGCATGGATTCAGTAGAGAAATCATCCAAGGGGGGTTTATGA 1170 0.4342 MATYEEVVDNPKLFMLSLEKLHALMCTKFMIPIIGGRELDLHRLFVEVTSRGGIEKIIKDRKWKEITLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKARNWTHTTSDVLQSQSSIPVPAPKMQILHSSPQIQPAVFQQLNVNAARLPQAMASSSAGSSVVGVIDGKFDSGYLVTVTIGSEKLKGVLYQAPQNAVLPTSHHSASANNNNVTASVGVHRRRRRKKSEMKKRDPAHPKPNRSGYNFFFAEQHARLKPLNQGRDREISRTIGELWNKLNDSEKAVYQDKAVKDKERYRTEMEYYREKLKMDQVISDAVPLQQRLPEPDTDMLNAEADSLQTPEESSSGGSDDYEDDKAMEKDYSMDALPVIGVGGECMDSVEKSSKGGL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06169 389 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Trre2g06169 389 Gene3D - 4 114 IPR036431 GO:0003677
Trre2g06169 389 MobiDBLite consensus disorder prediction 218 232 - -
Trre2g06169 389 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 355 - -
Trre2g06169 389 MobiDBLite consensus disorder prediction 333 365 - -
Trre2g06169 389 FunFam High mobility group B protein 15 2 116 - -
Trre2g06169 389 SUPERFAMILY HMG-box 226 309 IPR036910 -
Trre2g06169 389 SMART bright_3 9 100 IPR001606 GO:0003677
Trre2g06169 389 FunFam High mobility group B protein 15 220 315 - -
Trre2g06169 389 Gene3D High mobility group box domain 222 317 IPR036910 -
Trre2g06169 389 Pfam ARID/BRIGHT DNA binding domain 12 95 IPR001606 GO:0003677
Trre2g06169 389 SMART hmgende2 237 306 IPR009071 -
Trre2g06169 389 SUPERFAMILY ARID-like 8 105 IPR036431 GO:0003677
Trre2g06169 389 SMART ARID_2 5 95 - -
Trre2g06169 389 CDD HMG-box_AtHMGB9-like 238 304 - -
Trre2g06169 389 ProSiteProfiles ARID domain profile. 8 99 IPR001606 GO:0003677
Trre2g06169 389 MobiDBLite consensus disorder prediction 216 245 - -
Trre2g06169 389 CDD ARID_HMGB9-like 10 95 IPR045303 GO:0003677
Trre2g06169 389 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06169 Trre-Chr2 66288186 66290690 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06169 2 337 ARID Transcription Factor Family AT1G04880 61.756 2.97e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre2g06169 ARID 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06169 - - gmx:100807028 558.525