Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g06143 | ATGATCAAAAGGAGAATATTGCGCACAAAAGCTATCAAGTTGCTAGTTCTGGATGAATCTGATGAAATGCTGAGCAGAGGATTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCGGATCTTCAGGTTTGCTTGATTTCTGCTACGCTGCCTCATGATATTTTAGAGATGACAAATAAGTTTATGACAGATCCTGTGAGGATCCTTATAAAACGTGATGAATTGACGTTAGAGAGCATCAAGCAATATTTTGTTGCGGTTGAAAGGGAGGAATGGAAGTTTGATACTTTGTGTGATCTTTATGATAATTTTATCATCACTCAAGCTGTTGTATTCTGTAACACCAAGCGAAAGGTGGACTGGTTAACTGAAAAATTGCGTAGCAATAATTTCACTGTCTCATCGATGCATGGTGACATGCCTCAGAGAGAAAGAGATGCAATTATGGGAGAATTTTGTGCTGGAACAACCCGAGTATTGATAACAACTGATGTTTGGGCTCGTGGCCTTGATGTACAGCAGGTTTCTTTAGTTATTAACTACGACCTTCCAAATAATCGAGAGCTGTACATTCATCGGATTGGCCGTTCTGGACGTTTTGGGCGAAAGGGTACTGCAATAAATTTTGTGAAAAGCGACGATATCAAGATCTTGAGAGATATTGAGCAATACTACGGTACTCAGATTGATGATCTGCCAATGAATATTGCTGATCTTATATAA | 729 | 0.3855 | MIKRRILRTKAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHDILEMTNKFMTDPVRILIKRDELTLESIKQYFVAVEREEWKFDTLCDLYDNFIITQAVVFCNTKRKVDWLTEKLRSNNFTVSSMHGDMPQRERDAIMGEFCAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGTAINFVKSDDIKILRDIEQYYGTQIDDLPMNIADLI | 242 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g06143 | 242 | Pfam | Helicase conserved C-terminal domain | 95 | 203 | IPR001650 | - | |
Trre2g06143 | 242 | SMART | helicmild6 | 122 | 203 | IPR001650 | - | |
Trre2g06143 | 242 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 70 | IPR014001 | - | |
Trre2g06143 | 242 | Pfam | DEAD/DEAH box helicase | 3 | 56 | IPR011545 | GO:0003676|GO:0005524 | |
Trre2g06143 | 242 | Gene3D | - | 1 | 77 | IPR027417 | - | |
Trre2g06143 | 242 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 81 | 242 | IPR001650 | - | |
Trre2g06143 | 242 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 10 | 230 | IPR027417 | - | |
Trre2g06143 | 242 | CDD | SF2_C_DEAD | 82 | 212 | - | - | |
Trre2g06143 | 242 | Gene3D | - | 78 | 242 | IPR027417 | - | |
Trre2g06143 | 242 | FunFam | Eukaryotic initiation factor 4A-III | 76 | 242 | - | - | |
Trre2g06143 | 242 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 1 | 223 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g06143 | Trre-Chr2 | 66144902 | 66148553 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g06143 | 1 | 242 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 86.777 | 4.24e-162 | 453 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g06143 | K13025 | - | gmx:100795032 | 457.603 |