Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06143 ATGATCAAAAGGAGAATATTGCGCACAAAAGCTATCAAGTTGCTAGTTCTGGATGAATCTGATGAAATGCTGAGCAGAGGATTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCGGATCTTCAGGTTTGCTTGATTTCTGCTACGCTGCCTCATGATATTTTAGAGATGACAAATAAGTTTATGACAGATCCTGTGAGGATCCTTATAAAACGTGATGAATTGACGTTAGAGAGCATCAAGCAATATTTTGTTGCGGTTGAAAGGGAGGAATGGAAGTTTGATACTTTGTGTGATCTTTATGATAATTTTATCATCACTCAAGCTGTTGTATTCTGTAACACCAAGCGAAAGGTGGACTGGTTAACTGAAAAATTGCGTAGCAATAATTTCACTGTCTCATCGATGCATGGTGACATGCCTCAGAGAGAAAGAGATGCAATTATGGGAGAATTTTGTGCTGGAACAACCCGAGTATTGATAACAACTGATGTTTGGGCTCGTGGCCTTGATGTACAGCAGGTTTCTTTAGTTATTAACTACGACCTTCCAAATAATCGAGAGCTGTACATTCATCGGATTGGCCGTTCTGGACGTTTTGGGCGAAAGGGTACTGCAATAAATTTTGTGAAAAGCGACGATATCAAGATCTTGAGAGATATTGAGCAATACTACGGTACTCAGATTGATGATCTGCCAATGAATATTGCTGATCTTATATAA 729 0.3855 MIKRRILRTKAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHDILEMTNKFMTDPVRILIKRDELTLESIKQYFVAVEREEWKFDTLCDLYDNFIITQAVVFCNTKRKVDWLTEKLRSNNFTVSSMHGDMPQRERDAIMGEFCAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGTAINFVKSDDIKILRDIEQYYGTQIDDLPMNIADLI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06143 242 Pfam Helicase conserved C-terminal domain 95 203 IPR001650 -
Trre2g06143 242 SMART helicmild6 122 203 IPR001650 -
Trre2g06143 242 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 70 IPR014001 -
Trre2g06143 242 Pfam DEAD/DEAH box helicase 3 56 IPR011545 GO:0003676|GO:0005524
Trre2g06143 242 Gene3D - 1 77 IPR027417 -
Trre2g06143 242 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 81 242 IPR001650 -
Trre2g06143 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 230 IPR027417 -
Trre2g06143 242 CDD SF2_C_DEAD 82 212 - -
Trre2g06143 242 Gene3D - 78 242 IPR027417 -
Trre2g06143 242 FunFam Eukaryotic initiation factor 4A-III 76 242 - -
Trre2g06143 242 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06143 Trre-Chr2 66144902 66148553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06143 1 242 Eukaryotic Initiation Factors Gene Family AT3G19760 86.777 4.24e-162 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06143 K13025 - gmx:100795032 457.603