Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06142 ATGGCGGCAATGAGAAGATGCTTCCGTACGGACTTCGAGACAACGGAAGGCATCAAGACGATTACAACTTTCGAGGAGATGGGATTCAAACACGATTTACTCCGTGGAATCTACCAATTCGGTTTCGATAAACCATCGCCGATTCAACAGCGTGCTGTTGTGCCTATCATTCAGGGTCGCGATGTCATCGCCCAGGCTCAATCTGGTACTGGCAAGACCTCCATGATTGCTCTAACTGTTTGCCAGCTTGTCGATACCTCCGTCAGAGAGGTGCAGGCTTTAATTGTGTCTCCGACGAGGGAACTGGCCTCTCAAACTGAAAGAATTATACGAGCTATTGGGGATTTTGTAAATATACATGCGCATGCTTGCATTGGAGGTAAAAGTGTGGGAGAAGATATAAGGAAACTTGAACACGGAGTTCATGTGGTGTCTGGAACTCCTGGTCGAGTATGTGACATGATCAAAAGGAGAATATTGCGCACAAAAGCTATCAAGTTGCTAGTTCTGGATGAATCTGATGAAATGCTGAGCAGAGGATTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCGGATCTTCAGGTTTGCTTGATTTCTGCTACGCTGCCTCATGATATTTTAGAGATGACAAATAAGTTTATGACAGATCCTGTGAGGATCCTTATAAAACGTGATGAATTGACGTTAGAGAGCATCAAGCAATATTTTGTTGCGGTTGAAAGGGAGGAATGGAAGTTTGATACTTTGTGTGATCTTTATGATAATTTTATCATCACTCAAGCTGTTGTATTCTGTAACACCAAGCGAAAGGTGGACTGGTTAACTGAAAAATTGCGTAGCAATAATTTCACTGTCTCATCGATGCATGGTGACATGCCTCAGAGAGAAAGAGATGCAATTATGGGAGAATTTTGTGCTGGAACAACCCGAGTATTGATAACAACTGATGTTTGGGCTCGTGGCCTTGATGTACAGCAGGTTTCTTTAGTTATTAACTACGACCTTCCAAATAATCGAGAGCTGTACATTCATCGGATTGGCCGTTCTGGACGTTTTGGGCGAAAGGGTACTGCAATAAATTTTGTGAAAAGCGACGATATCAAGATCTTGAGAGATATTGAGCAATACTACGGTACTCAGATTGATGATCTGCCAATGAATATTGCTGATCTTATATAA 1188 0.42 MAAMRRCFRTDFETTEGIKTITTFEEMGFKHDLLRGIYQFGFDKPSPIQQRAVVPIIQGRDVIAQAQSGTGKTSMIALTVCQLVDTSVREVQALIVSPTRELASQTERIIRAIGDFVNIHAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRILRTKAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHDILEMTNKFMTDPVRILIKRDELTLESIKQYFVAVEREEWKFDTLCDLYDNFIITQAVVFCNTKRKVDWLTEKLRSNNFTVSSMHGDMPQRERDAIMGEFCAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGTAINFVKSDDIKILRDIEQYYGTQIDDLPMNIADLI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06142 395 SMART ultradead3 41 238 IPR014001 -
Trre2g06142 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 378 IPR027417 -
Trre2g06142 395 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 234 395 IPR001650 -
Trre2g06142 395 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Trre2g06142 395 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 375 - -
Trre2g06142 395 Gene3D - 7 226 IPR027417 -
Trre2g06142 395 CDD DEADc_EIF4AIII_DDX48 24 224 - -
Trre2g06142 395 CDD SF2_C_DEAD 235 365 - -
Trre2g06142 395 SMART helicmild6 275 356 IPR001650 -
Trre2g06142 395 FunFam Eukaryotic initiation factor 4A-III 229 395 - -
Trre2g06142 395 Pfam Helicase conserved C-terminal domain 248 356 IPR001650 -
Trre2g06142 395 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 223 IPR014001 -
Trre2g06142 395 FunFam ATP-dependent RNA helicase DBP5 5 228 - -
Trre2g06142 395 Gene3D - 227 395 IPR027417 -
Trre2g06142 395 Pfam DEAD/DEAH box helicase 47 209 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06142 Trre-Chr2 66144902 66149612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06142 12 395 Eukaryotic Initiation Factors Gene Family AT3G19760 84.115 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06142 K13025 - gmx:100800020 707.212