Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06125 ATGGAGGGTGTGAAGACGATTAAAAGTTTCGAGGAGATGGGAATCAAAGAAGATTTACTCCGTGGAATCTACCAATACGGTTTCAACAAACCATCTCCGATTCAACAGCGTGTTGTTACACCTATCATTCAAGGTCGCGATGTCATTGCTCAAGCTCAATCTGGAACTGGCAAGACTTCCATGATTGCTCTAACTGTTTGCCATCTTGTCGATACTTCCATCAGAGAAGTTCAGGCTTTGATTGTGTCGCCAACAAGGGAACTGGCCTCACAAACTGAAAAAGTTATATCTGTTGATTTTTTTTCTATTGGAGATTTCACAAATATACAATCCCATGCTTGTGTCGGAGGCAAAAGTGTTGGAGAAGACTTAAGGAAACTTGAACACGGAGTTCATGTAGTGTCTGGAACTCCCGGTCGAGTTCTTGACATGATCAAAAGGAGAACATTGCGCACAAGAGCTATCAAGTTGCTTGTTCTGGATGAATCTCATGAAATGCTGAGCAGAGGTTTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCGGATCTTCAGGTTGTTCTTGTTTCCGCTACGCTACCTCATGATATTTTGGAGATGACAAATAAGTTCATGACAGATCCTGTCAGGATCCTTGTAAAACGCGATGAATTGACATTGGAGGGCATCAAGCAATTTTTCGTTGCCGTTGAAAGGGAGGAATGGAAGTTTGACACTCTGTGTGATCTTTATGATATTCTTACCATTACTCAAGCTGTTATATTCTGTAACACCAAAAGAAAGGTGGACTGGTTAGCTGAAAAATTGCGGAACAATAATTTCACGGTATCCTCAATGCATGGTGACATGCCTCAAAGAGAAAGAGATGCAATTATGGGAGAATTTCGTGCGGGAACAACCCGAGTATTGATAACAACAGATGTTTGGGCTCGTGGCCTTGATGTGCAGCAGGTTTCTCTAGTTATTAATTACGACCTTCCAAATAATCGAGAGCTCTATATTCATCGGATTGGCCGTTCTGGACGTTTTGGGCGAAAGGGTGTCACAATAAATTTTGTGAAAAGCGATGATATTAAGATACTGAGAGATATTGAGCAATATTACAGTACTCAAATTGATGATCTGCCATCAAATGTTGCTGATCTTATATAA 1158 0.405 MEGVKTIKSFEEMGIKEDLLRGIYQYGFNKPSPIQQRVVTPIIQGRDVIAQAQSGTGKTSMIALTVCHLVDTSIREVQALIVSPTRELASQTEKVISVDFFSIGDFTNIQSHACVGGKSVGEDLRKLEHGVHVVSGTPGRVLDMIKRRTLRTRAIKLLVLDESHEMLSRGFKDQIYDVYRYLPPDLQVVLVSATLPHDILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDILTITQAVIFCNTKRKVDWLAEKLRNNNFTVSSMHGDMPQRERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVTINFVKSDDIKILRDIEQYYSTQIDDLPSNVADLI 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06125 385 SMART helicmild6 265 346 IPR001650 -
Trre2g06125 385 Pfam Helicase conserved C-terminal domain 239 346 IPR001650 -
Trre2g06125 385 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 224 385 IPR001650 -
Trre2g06125 385 FunFam ATP-dependent RNA helicase DBP5 1 218 - -
Trre2g06125 385 Pfam DEAD/DEAH box helicase 33 199 IPR011545 GO:0003676|GO:0005524
Trre2g06125 385 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 213 IPR014001 -
Trre2g06125 385 Gene3D - 2 220 IPR027417 -
Trre2g06125 385 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 91 IPR027417 -
Trre2g06125 385 SMART ultradead3 27 228 IPR014001 -
Trre2g06125 385 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 368 IPR027417 -
Trre2g06125 385 Gene3D - 221 385 IPR027417 -
Trre2g06125 385 FunFam Eukaryotic initiation factor 4A-III 219 385 - -
Trre2g06125 385 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 367 - -
Trre2g06125 385 CDD SF2_C_DEAD 225 355 - -
Trre2g06125 385 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 8 36 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06125 Trre-Chr2 65947950 65954912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06125 2 385 Eukaryotic Initiation Factors Gene Family AT3G19760 84.115 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06125 K13025 - gmx:100795032 696.812