Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06118 ATGCAGCCATACGGAGATGTTGATTCCACTTTGAGGGCAATCGCCGGTCGCGCCGAGGGTTTCGGTCGCCTCGCCATCGGTGGTCTCCACGGTCCTCTCTATTTGGTTACCTCCCTTTCAGATGATGGTCCTGGTTCCCTTCGTGAAGGATGTCGTAGAAAGGAGCCGCTGTGGATTGTTTTTGAAGTTTCAGGTACAATTCATCTTTCATCATACTTGAGTGTGTCCTCTCATAAGACAATTGATGGAAGAGGCCAGAGGATTAAATTGACTGGGAAAGGCTTGAGGCTGAAAGAATGTGAGAACATAATTGTATGCAACCTTGAGTTTGAAGGGGGTAGGGGTCATGATGTTGATGGGATTCAAATTAAACCAAATTCTAAGAATATTTGGATAGACCGTTGCAGCCTCCGAGATTATGATGACGGACTTATAGACATCACAAGACAAAGCACGGATATCACTATATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTCATTGGAGCCGACCCAACACACGTCGGTGATAGATGCATCCGGGTGACGATTCATCATTGTTTCTTTGATGGAACCAACCAGAGACACCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGAAAGTATATGCAATTTGTGCTAGTGTTGAGTCCCAGATATACTCCCAATGCAACATATATGAAGCAGGAGATAAGAAAAAGGCTTATGAATTTTATACTGAGAAGGCGGCAGACAAAGAAGAGCCGAAGTCTGGCATCATAATATCTGAAGGAGACATGGTTCTGAATGGTGCTCAGCCATGCCTGCCAACTGAATATAAAGAATCAGTTTTCCATCCTAGTGAATATTACCCAACTTGGACAATGGAAGCAGCTACACATTCTCTCAGAGAGATTATTCAGTTATGTACAGGTTGGCAGTCCCTTTGCAGGCCAGTAGACCATATGGTAATGAACTAG 987 0.4397 MQPYGDVDSTLRAIAGRAEGFGRLAIGGLHGPLYLVTSLSDDGPGSLREGCRRKEPLWIVFEVSGTIHLSSYLSVSSHKTIDGRGQRIKLTGKGLRLKECENIIVCNLEFEGGRGHDVDGIQIKPNSKNIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTNQRHPRVRFGKVHLYNNYTRNWKVYAICASVESQIYSQCNIYEAGDKKKAYEFYTEKAADKEEPKSGIIISEGDMVLNGAQPCLPTEYKESVFHPSEYYPTWTMEAATHSLREIIQLCTGWQSLCRPVDHMVMN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06118 328 PANTHER PECTATE LYASE 18-RELATED 6 280 IPR045032 GO:0030570
Trre2g06118 328 SUPERFAMILY Pectin lyase-like 15 321 IPR011050 -
Trre2g06118 328 Pfam Pectate lyase 72 235 IPR002022 -
Trre2g06118 328 Gene3D - 4 314 IPR012334 -
Trre2g06118 328 SMART amb_all 64 242 IPR002022 -
Trre2g06118 328 PRINTS Pollen allergen Amb family signature 197 216 IPR018082 -
Trre2g06118 328 PRINTS Pollen allergen Amb family signature 17 34 IPR018082 -
Trre2g06118 328 PRINTS Pollen allergen Amb family signature 219 238 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06118 Trre-Chr2 65904161 65906263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06118 41 326 Polysaccharide Lyase AT3G55140 79.443 1.01e-177 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06118 K01728 - gmx:100802068 609.757