Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06117 ATGCAGCCATACGGAGATGTTGATTCCACTTTGAGGGCAATCGCCGGTCGCGCCGAGGGTTTCGGTCGCCTCGCCATCGGTGGTCTCCACGATGATGGTCCTGGTTCCCTTCGTGAAGGATGTCGTAGAAAGGAGCCGCTGTGGATTGTTTTTGAAGTTTCAGGTACAATTCATCTTTCATCATACTTGAGTGTGTCCTCTCATAAGACAATTGATGGAAGAGGCCAGAGGATTAAATTGACTGGGAAAGGCTTGAGGCTGAAAGAATGTGAGAACATAATTGTATGCAACCTTGAGTTTGAAGGGGGTAGGGGTCATGATGTTGATGGGATTCAAATTAAACCAAATTCTAAGAATATTTGGATAGACCGTTGCAGCCTCCGAGATTATGATGACGGACTTATAGACATCACAAGACAAAGCACGGATATCACTATATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTCATTGGAGCCGACCCAACACACGTCGGTGATAGATGCATCCGGGTGACGATTCATCATTGTTTCTTTGATGGAACCAACCAGAGACACCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGAAAGTATATGCAATTTGTGCTAGTGTTGAGTCCCAGATATACTCCCAATGCAACATATATGAAGCAGGAGATAAGAAAAAGGCTTATGAATTTTATACTGAGAAGGCGGCAGACAAAGAAGAGCCGAAGTCTGGCATCATAATATCTGAAGGAGACATGGTTCTGAATGGTGCTCAGCCATGCCTGCCAACTGAATATAAAGAATCAGTTTTCCATCCTAGTGAATATTACCCAACTTGGACAATGGAAGCAGCTACACATTCTCTCAGAGAGATTATTCAGTTATGTACAGGTTGGCAGTCCCTTTGCAGGCCAGTAGACCATATGGTAATGAACTAG 957 0.4389 MQPYGDVDSTLRAIAGRAEGFGRLAIGGLHDDGPGSLREGCRRKEPLWIVFEVSGTIHLSSYLSVSSHKTIDGRGQRIKLTGKGLRLKECENIIVCNLEFEGGRGHDVDGIQIKPNSKNIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTNQRHPRVRFGKVHLYNNYTRNWKVYAICASVESQIYSQCNIYEAGDKKKAYEFYTEKAADKEEPKSGIIISEGDMVLNGAQPCLPTEYKESVFHPSEYYPTWTMEAATHSLREIIQLCTGWQSLCRPVDHMVMN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06117 318 SMART amb_all 54 232 IPR002022 -
Trre2g06117 318 PANTHER PECTATE LYASE 18-RELATED 7 270 IPR045032 GO:0030570
Trre2g06117 318 PRINTS Pollen allergen Amb family signature 209 228 IPR018082 -
Trre2g06117 318 PRINTS Pollen allergen Amb family signature 26 51 IPR018082 -
Trre2g06117 318 PRINTS Pollen allergen Amb family signature 187 206 IPR018082 -
Trre2g06117 318 SUPERFAMILY Pectin lyase-like 15 311 IPR011050 -
Trre2g06117 318 Gene3D - 4 304 IPR012334 -
Trre2g06117 318 Pfam Pectate lyase 63 225 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06117 Trre-Chr2 65904161 65906263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06117 21 316 Polysaccharide Lyase AT3G55140 77.592 8.24e-178 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06117 K01728 - gmx:100802068 585.489