Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06074 ATGTTGAAGAGAGAAAGAGAAAGTGATCTTAATACTAATAGCATAACCATGGCGAAATACTTGATGTTACTTTCTGGTGGAGAATTTGATCAAGTGAATTACTCTTCAAATTTCAACAACCGTGTGTTCGAGTGCAAGACATGTAAAAGACAATTCTCGTCGTTTCAAGCGTTGGGAGGACACAGAGCGAGTCACAAGAAACCGCGGTTGATGGAGATGACGAGTGATGGTGATGATCATTCACTTGCAATAAAAACAAAGGCTAAAACACATGAATGTTCAATTTGTGGATTGGAATTTGCAATAGGACAAGCTTTGGGTGGTCACATGAGAAGACATAGAAAAACAGCATCAAAAGTTTCTAATAATTCAAATGGAAACATGCACAATTTTATGACTGCAACTACTACTAGTAGTAGCAATAGTGGTGCTAGTACTATTGATAATAGTACTAATACTAATTCAGCAAAGAGGAACAAGGGGAACACCAATAATAGATTTTTGTATCTGGATTTGAATTTGACACCTTTAGAGAATGATTTGAAGTTTTTGAAGATTGGACAATCAACTCCTAATTTGGTGGATTGTTTCTATTGA 597 0.3585 MLKRERESDLNTNSITMAKYLMLLSGGEFDQVNYSSNFNNRVFECKTCKRQFSSFQALGGHRASHKKPRLMEMTSDGDDHSLAIKTKAKTHECSICGLEFAIGQALGGHMRRHRKTASKVSNNSNGNMHNFMTATTTSSSNSGASTIDNSTNTNSAKRNKGNTNNRFLYLDLNLTPLENDLKFLKIGQSTPNLVDCFY 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06074 198 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Trre2g06074 198 SUPERFAMILY beta-beta-alpha zinc fingers 41 113 IPR036236 -
Trre2g06074 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Trre2g06074 198 Pfam C2H2-type zinc finger 42 68 - -
Trre2g06074 198 Pfam C2H2-type zinc finger 91 115 - -
Trre2g06074 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Trre2g06074 198 SMART c2h2final6 91 113 IPR013087 -
Trre2g06074 198 SMART c2h2final6 43 65 IPR013087 -
Trre2g06074 198 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Trre2g06074 198 PANTHER ZINC FINGER PROTEIN ZAT5 16 180 - -
Trre2g06074 198 MobiDBLite consensus disorder prediction 135 161 - -
Trre2g06074 198 Gene3D Classic Zinc Finger 40 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06074 Trre-Chr2 65652061 65652657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06074 5 198 C2H2 Transcription Factor Family AT2G28200 37.826 1.82e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g06074 zf-C2H2_6 7.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06074 - - psat:127098085 284.648