Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06063 ATGTTTGGCCTAACTCTCATGTTTGTATTCTCTAGTGAACACAAATGTGCAACCAAAGAGATGGAGTTTCTGGAAATTCCATCTCTACCGGTTGCGCGGTTCGAGGATTTGGATGAAGATGAAGATCAGGATGAGATTTGCTCCATTTGCTTGGTTGAGTTTGAGGGGGAAGATGCAGTGAGCAAGTTGAGGAGATGTGAGCATGTGTTTCATTTCAATTGCATTGAGCAATGGTTAGAACGAAATCAATTTTCTTGTCCACTTTGTAGGTCTTTATTATTTTCTTAA 288 0.3993 MFGLTLMFVFSSEHKCATKEMEFLEIPSLPVARFEDLDEDEDQDEICSICLVEFEGEDAVSKLRRCEHVFHFNCIEQWLERNQFSCPLCRSLLFS 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06063 95 SMART ring_2 47 89 IPR001841 -
Trre2g06063 95 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 93 IPR013083 -
Trre2g06063 95 ProSiteProfiles Zinc finger RING-type profile. 47 90 IPR001841 -
Trre2g06063 95 SUPERFAMILY RING/U-box 25 93 - -
Trre2g06063 95 PANTHER RING ZINC FINGER PROTEIN-RELATED 28 91 - -
Trre2g06063 95 Pfam Ring finger domain 46 90 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06063 Trre-Chr2 65590999 65591286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06063 38 95 C3H Transcription Factor Family AT4G38140 55.172 1.99e-20 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06063 - - pvu:PHAVU_007G012000g 110.923