Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06055 ATGGCTGCTTCTCTCTCTTTCTCTGCCCTCGCCACAGAAACCTCCACCACCGCCGACAGAAAAGGTCGCCGTCGTTCCTCGTGCCGTCGTCGACTCATGATGGTGTTGTCTGCTTTCTTGCTTGCAGAGAAGGAGAAGAACTGTAGAACATGTATTGTGCTTCCCCTGCAAGAGTATGCCGAGTTGAAGACATGTTTGAGTCATGTTCCTGAAGTTTCCAACAAAGAAGAAACTGCTGGTGGGGTATTGGAGAATTGGCCACAGAGACTTGAGTTTGTTTCATATATGGAAGGAATTCCAAGCAAAGCTAAAAATTTACCGATGAATTTGTTATTAGGAAAGCTGTATCGAATTTCACATGGCCGAGCTGTTGTTGCTATTTACAAAGAATGCCTAAGAGTATTGGACTGTCCAAGCAGGCTGCAATATCAGCATGGAGTTCGACTGTCATCCTTCTTTCTGGAAAACAAGGGTCCCATAATTGCCGTCGAATATATTGTTGGAGGTTATTGTATTATGAGGTTGGATAATATAGAAGAAGCTAGCAAGGATACACCTGGCAGAAGTTTCTATTATGCAATGGAGCCTCTTCGCCACATGTGTCTTTTTTTGCAGTGGTCGCTGAACACCATGGAGATAGCGCTATTCCCTTCAGACGTTTCTGTCGCGGTGTTGGTAGGACTGCACAAGCTAAGAATAGACATTCCAATGGGCAAGAATTCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTGTATGTTTCTCATATCCAGGTCAATCAAGCTCAAAAGCAAAGACGCCGTACCTACAGGGCACATGGAAGAATCAATCATATCCTACATGTCATCTCCATGCCTCATTGA 873 0.4444 MAASLSFSALATETSTTADRKGRRRSSCRRRLMMVLSAFLLAEKEKNCRTCIVLPLQEYAELKTCLSHVPEVSNKEETAGGVLENWPQRLEFVSYMEGIPSKAKNLPMNLLLGKLYRISHGRAVVAIYKECLRVLDCPSRLQYQHGVRLSSFFLENKGPIIAVEYIVGGYCIMRLDNIEEASKDTPGRSFYYAMEPLRHMCLFLQWSLNTMEIALFPSDVSVAVLVGLHKLRIDIPMGKNSESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINHILHVISMPH 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06055 290 SUPERFAMILY Ribosomal protein L22 239 284 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trre2g06055 290 Gene3D Ribosomal protein L22/L17 235 287 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trre2g06055 290 PANTHER 60S RIBOSOMAL PROTEIN L17 237 281 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre2g06055 290 Pfam Ribosomal protein L22p/L17e 239 284 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06055 Trre-Chr2 65549565 65554109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06055 239 280 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.476 4.74e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06055 K02880 - egr:104415686 85.5001