Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06053 ATGGCAACAAAGGGAGCGAAAAGGGTTGATGCCGTCGATTCTCGTGCTGGTTCCATTCTTGTTCGTGCTAGAGATGGAAGTGCTTTCGCTAAATGTGATGAGTGCAAGAAAGATGTTCCTGTGGCACTCATTAGTATGCACGATTGTAGCCTTGAAGCCAAAATCAAAATGAATCTCGATGCTCAAGTTATTGAGCAAGCTGCTGAAGCGAAGAAACCTGAGAGGAAGAAGCCTAAATCGAAAGAACCAAGTGCTAAAAGGGCTAAGGTTGGGAAAGTGAAGAAGGTTAAGGATCCTAACATGCCCAAGCGTCCTCCTACTGCTTTCTTTGTTTTCATGGATGATTTTAGAAAAACATTTAAGGAAGCTAATCCTGATTCAAAGGATGTTAAAAGAGTTGGTAAAGAGGCTGGTGAGAAGTGGAGGTCTTTGACTGATGAAGAGAAGAAGCCTTATTTGGATAGAGTTATTGAACTGAAAGCAGAGTATGAGAAGGCTATGGAAATCTATAATGCCACTGAAAAGGAAGATCAAGAGGAGGGTTCTGATAAGTCTGATAAGGAATCCCCTGCAACAGTAGAGGTGGAAGAGTTAACAGATGAGGAGTAG 609 0.422 MATKGAKRVDAVDSRAGSILVRARDGSAFAKCDECKKDVPVALISMHDCSLEAKIKMNLDAQVIEQAAEAKKPERKKPKSKEPSAKRAKVGKVKKVKDPNMPKRPPTAFFVFMDDFRKTFKEANPDSKDVKRVGKEAGEKWRSLTDEEKKPYLDRVIELKAEYEKAMEIYNATEKEDQEEGSDKSDKESPATVEVEELTDEE 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06053 202 CDD HMG-box_AtHMGB1-like 103 163 - -
Trre2g06053 202 MobiDBLite consensus disorder prediction 67 104 - -
Trre2g06053 202 MobiDBLite consensus disorder prediction 170 202 - -
Trre2g06053 202 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 7 194 - -
Trre2g06053 202 MobiDBLite consensus disorder prediction 67 101 - -
Trre2g06053 202 SUPERFAMILY HMG-box 88 170 IPR036910 -
Trre2g06053 202 Gene3D High mobility group box domain 86 187 IPR036910 -
Trre2g06053 202 MobiDBLite consensus disorder prediction 170 194 - -
Trre2g06053 202 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Trre2g06053 202 Coils Coil 156 180 - -
Trre2g06053 202 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Trre2g06053 202 SMART hmgende2 101 172 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06053 Trre-Chr2 65536400 65537707 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre2g06053 HMG_box 4.9e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06053 K25507 - gmx:100306558 284.263