Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06050 ATGCTTGATAATGTGGATAATAACCATAAGTTCATCGACTCAGCTTGGAGACTATGCACTGTTGTAGGTGGTTGGGTTTCTGGTTTAATTTCAAAACCTTACAGAAAAGTGGTTGGCTCAGCATTTGATGGTTCTATTTCTAGGTTGGCCAAGGAAAGAGAAAATTATTATCTAGATTCCATGGATCAGTGTATATATATTAGTTCGTCAGATGATGAGTTGGAGGAGATAGCAGATCCTGGAAGGGTTCTGCCAAAATGGGCTGGTTCTGAAAGGAATTCAGATTCAAGAAGGGCAAATGGTTCAAACGCGAGCTCTTCTAACATTTTTAATCATTCACAAGTTAATCGCCATAATCAACCTGGTCCCAGCAATGGAAGCACAAGTCAGCATCAGACAGTAAATTCCCGAATTTCTAATACTAATGGTGCCAGTTATGAGAAAATTTCATCTCAACAAGCTTTCAACAGGACTCTTCCACCATCTTTTCAATCATCTGCAACAAGGTCTCTTCCACCTTCGTCATTTCCACCTAATAACAGATTAAGCAATGTAAGCAGCAGCCAACTTAATGATCCATACCGGAGTCGCCACCATGGCGTAGGACCTAGCACGTCCAGTGAGAAGGGCTTTTTTCGCGACAATTTTGGCAGAGGCAATGACGGAGATCGTTTCATGAATCAGAACGGAGGGATCAGGTCTCTTCCCCCATCTTTGATGCATGGAAAAGCTATAACTCCACCATTTGCTAGTTCTAGTGAATCTGCATACCTTGCTGGAGCAGGTGATGAAAGGGCTTCTACAGCTGATGAGAGACTAATTTATGAAGCAGCATTACAGGATCTCAGTCAACCCTTAAAAGAAGCTGATTTACCTGCTGGTATAATGTCTGTCCCTCTTATGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAACGATAGCTCTCATCCTAATGCAAAGGCAATCACAGTCAAAATGGAAAACAGATGATACATGCAACCATAAAGCTGAAGCCTTGAATTTGGATGATGACGATGATAATGGTAGTATTGATGTGGAAAAGATTAAAAATGATGAAGAACCCAGTGATGCAAAACCTATTACTGAAGCGAGCAGTTCAACACGGGCCCCAGGTAGGAACAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCCAGAGAACTTGATGAGAAAGTTGGAGATGAAATGCTTTCTGTTTTGATTTTTCATGGGGGCAGTAGGACAAAGGATCCCGTTGAACTTGCAAAATATGATGTGGTTCTCACAACATACTCTCTTGTGACTAATGAAGTTCCCAAGCAACCACTAATTGACGATGAGGATATTGATGACAAAGATGGGGAAAAGTTTGGTTTATCCTCCGATTTTTCTGTCGGTAAAAAGAGGAAAAAAACATATAATGGAAGTAAGAAGGGTAAAAAAGGTAGAAAGGGAATAGACAGTTCTTCTTTCGAATGTGCTTCTGGCGCTCTTGCAAAAGTTGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAATCATAGGACTCAGATGGCCAGAGCTTGCTCCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTGTCTGGCACACCTATTCAGAATACTATTGATGATTTATATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCATTCTACAATACAATAAAAGTCCCAATATCCAGAAATTCCATTCAAGGTTACAAAAAACTTCAAGCAGTTTTGAGGGCCATAATGCTTCGTCGTACAAAAGGAACTTTGCTTGATGGCAAGCCGATAATCACTTTACCTCCTAAAACAATTAATCTGAGTAAGGTGGATTTCTCCTATGAGGAGCGGGCCTTCTACAAGAAGTTGGAAGCTGATTCACGTTCTCAATTTAAGGCATATGCGGCTGCTGGCACAGTAAATCAAAACTATGCAAATATCCTTTTAATGCTGTTGCGTCTCCGTCAGGCTTGTGATCACCCGCTTCTTGTTAAAGAATATAGTTCTGATCCTGTCGGGAAAGATTCTGTTGAAATGGCAAAAAAACTTCCAAAGGACATGCTGATCAATCTGTTTAATAGTCTGGAAACAACTTCTGCCATATGTTGTGTCTGCAATGATCCACCCGACGACTCTGTTATTTCGATGTGTGGCCATGTCTTCTGTTATCAGTGCGTATCAGAGCATTTGACAGGTGATGATAATATGTGCCCTGCAGTTCATTGTAAAGAACAACTTGGTGAAGATCTTGTTTTCTCCAAAGCAACTTTGAGGAGTTGCATCTCTGACGAACTTGGTGGCAGTAGTTCTGGAAATTCGAGTCTTGTTGATTATTCACTAGTACAGAACAGTGACTACAGCTCATCTAAAATCAAAGCTGTCCTTGAGGTTCTGCAGTCAAGTTGCAAATTGAAGACTCCTTTACTGAATTCCTCCGAAGGAAATAGAGGTTCACTGCCTTCTGATGATTCAGATATTGAAGATTTTGATTCAGATGTCAAGGTTATAAAACACACAACAAAGTATTCAGAGTGCACAACTGGAGGACCGCTAAAGGCTATAATTTTTTCTCAGTGGACTAGTATGTTGGACTTAGTTGAGACGGCAATGGAGCAGTCTGGCGTAAAGTACAGGAGACTTGATGGTAGGATGACTTTGACTGCGAGGGACAGAGCTGTTAAGGATTTCAATTCTGATCCCGAGATTACGGTTATGCTGATGTCACTGAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCTCATAGAATCGGACAGACTCGCCCAGTTACTGTGACACGGATCACCATTAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGAAGAAAAGAGAAAAATGGTGGCATCCGCTTTTGGCGAAGACCATGCTGGTGGCTCTGGAGCTAGGCTTACTGTTGATGATCTGAAATATCTTTTTATGGTCTAG 3147 0.4156 MLDNVDNNHKFIDSAWRLCTVVGGWVSGLISKPYRKVVGSAFDGSISRLAKERENYYLDSMDQCIYISSSDDELEEIADPGRVLPKWAGSERNSDSRRANGSNASSSNIFNHSQVNRHNQPGPSNGSTSQHQTVNSRISNTNGASYEKISSQQAFNRTLPPSFQSSATRSLPPSSFPPNNRLSNVSSSQLNDPYRSRHHGVGPSTSSEKGFFRDNFGRGNDGDRFMNQNGGIRSLPPSLMHGKAITPPFASSSESAYLAGAGDERASTADERLIYEAALQDLSQPLKEADLPAGIMSVPLMRHQKIALAWMLQRENRSLHCLGGILADDQGLGKTISTIALILMQRQSQSKWKTDDTCNHKAEALNLDDDDDNGSIDVEKIKNDEEPSDAKPITEASSSTRAPGRNRPAAGTLVVCPASVLRQWARELDEKVGDEMLSVLIFHGGSRTKDPVELAKYDVVLTTYSLVTNEVPKQPLIDDEDIDDKDGEKFGLSSDFSVGKKRKKTYNGSKKGKKGRKGIDSSSFECASGALAKVGWFRVILDEAQTIKNHRTQMARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIITLPPKTINLSKVDFSYEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYSSDPVGKDSVEMAKKLPKDMLINLFNSLETTSAICCVCNDPPDDSVISMCGHVFCYQCVSEHLTGDDNMCPAVHCKEQLGEDLVFSKATLRSCISDELGGSSSGNSSLVDYSLVQNSDYSSSKIKAVLEVLQSSCKLKTPLLNSSEGNRGSLPSDDSDIEDFDSDVKVIKHTTKYSECTTGGPLKAIIFSQWTSMLDLVETAMEQSGVKYRRLDGRMTLTARDRAVKDFNSDPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGGSGARLTVDDLKYLFMV 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06050 1048 SMART helicmild6 907 990 IPR001650 -
Trre2g06050 1048 MobiDBLite consensus disorder prediction 158 226 - -
Trre2g06050 1048 CDD SF2_C_SNF 895 999 - -
Trre2g06050 1048 MobiDBLite consensus disorder prediction 375 391 - -
Trre2g06050 1048 MobiDBLite consensus disorder prediction 158 211 - -
Trre2g06050 1048 CDD DEXDc_SHPRH-like 300 629 - -
Trre2g06050 1048 Gene3D - 393 482 IPR038718 -
Trre2g06050 1048 SMART ring_2 745 783 IPR001841 -
Trre2g06050 1048 ProSitePatterns Zinc finger RING-type signature. 760 769 IPR017907 -
Trre2g06050 1048 MobiDBLite consensus disorder prediction 85 135 - -
Trre2g06050 1048 MobiDBLite consensus disorder prediction 502 521 - -
Trre2g06050 1048 Gene3D - 644 1046 IPR027417 -
Trre2g06050 1048 Pfam Helicase conserved C-terminal domain 895 990 IPR001650 -
Trre2g06050 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 290 629 IPR027417 -
Trre2g06050 1048 Gene3D - 276 359 IPR038718 -
Trre2g06050 1048 Gene3D - 499 642 IPR038718 -
Trre2g06050 1048 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 93 1047 - -
Trre2g06050 1048 Pfam Zinc finger, C3HC4 type (RING finger) 745 781 IPR018957 GO:0046872
Trre2g06050 1048 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 315 591 IPR014001 -
Trre2g06050 1048 SMART ultradead3 296 608 IPR014001 -
Trre2g06050 1048 ProSiteProfiles Zinc finger RING-type profile. 745 781 IPR001841 -
Trre2g06050 1048 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 393 480 - -
Trre2g06050 1048 MobiDBLite consensus disorder prediction 363 408 - -
Trre2g06050 1048 MobiDBLite consensus disorder prediction 94 135 - -
Trre2g06050 1048 Pfam SNF2-related domain 303 706 IPR000330 GO:0005524|GO:0140658
Trre2g06050 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 1047 IPR027417 -
Trre2g06050 1048 SUPERFAMILY RING/U-box 743 804 - -
Trre2g06050 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 795 IPR013083 -
Trre2g06050 1048 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 509 641 - -
Trre2g06050 1048 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 877 1043 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06050 Trre-Chr2 65515532 65523682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06050 61 948 RAD5 or RAD16-like Gene Family AT1G50410 56.163 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre2g06050 SNF2_N 7.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06050 - - gmx:100811598 1499.57