Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06048 ATGGAGAGGCAGAACAACCAAACTCACAATAACAAAAGGGCAAGATTGGCACCACCAACTGGACAACATGATTCCTGTGACAGGGAATATTTCAATAGTTACAATAATGTTAGCCTTCACCAAAATTTGATCAAGGATAACGTGTGGACTAAGGCCTATAAAACTGCTATTGAACATCATCAGCAACAAATTGCTGGAAAGATTGTTTTAGATGTTGGATGTGGAACAGGTCTATTATCTATATTGTGTGCTCAAGCTGGAGCAAGTAAGGTATATGCCATTGATGCGAGTGACATTGCTAAGCAGGCCGAAACGGTTGTTTTGGCAAATAATCTTTCTGACATCATCACTGTATTGCATGGACGAGTTGAGGATCTTCAACTCAGTGAGAAGGTGGATGTAATCATTTCAAATTGGATGGGCTACATGCTTCTCCATGAGGGCATGCTTGCAAGTGTCATCTTTGCCAGAGACCGTTGGCTCAAACCCGGAGGTTTAATGCTTCCTTCTCATGCAACGTTATATCTAGCTCCTGTCACAACTAACAAACATCGTGACTGCATAGACTCTTGGCGCAATGTTGAAGGGATCGACATGTCAGCCATAATTCCAATGGCGAGAACCCATGCTTTTCAAGAACCTATTATGGAGACACTTTCAAGTGAAAATGTTCTAGCTGAGCCTTGTATGGTGAAATACATCAATACATCTTCAGTCACCATGCATGAGCTAGAAACAATTGCAACAGAGTTTCACTTTATTGCAATGAAGAGTGCACCACTGAGTGGCTTTGCAATATGGTTTGATGTGGAATTTGCTGGGAATCTATTATCACCTTTTCCCATTCGCTGTCGGTTTCCGCTTTCAAGTGCTGACGGTGTTCCCGCATTTGGTAATCAGAGACAACGGACAACCAACCTTAATGAAGCGCTGGTGATGTCCACTGGGCCTGAAGATCCACCTACCCACTGGAAACAGACATTGATATACTGTTGGAATCCAAGAGAAATTGAAAATGGTCAAGTCATAAAAGTAAAGTTGAGTTTATCAAAGAGTTTTTGGTCACCTCGGTCTATATGTATTAACGTTGAATATACTTTGGACGGTCAAGACTACTTTGTCTACGATACAGTTATGAAATGA 1143 0.4147 MERQNNQTHNNKRARLAPPTGQHDSCDREYFNSYNNVSLHQNLIKDNVWTKAYKTAIEHHQQQIAGKIVLDVGCGTGLLSILCAQAGASKVYAIDASDIAKQAETVVLANNLSDIITVLHGRVEDLQLSEKVDVIISNWMGYMLLHEGMLASVIFARDRWLKPGGLMLPSHATLYLAPVTTNKHRDCIDSWRNVEGIDMSAIIPMARTHAFQEPIMETLSSENVLAEPCMVKYINTSSVTMHELETIATEFHFIAMKSAPLSGFAIWFDVEFAGNLLSPFPIRCRFPLSSADGVPAFGNQRQRTTNLNEALVMSTGPEDPPTHWKQTLIYCWNPREIENGQVIKVKLSLSKSFWSPRSICINVEYTLDGQDYFVYDTVMK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06048 380 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 27 364 IPR025799 GO:0016274|GO:0018216
Trre2g06048 380 Pfam Ribosomal protein L11 methyltransferase (PrmA) 63 145 - -
Trre2g06048 380 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 22 368 IPR025799 GO:0016274|GO:0018216
Trre2g06048 380 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 33 369 IPR029063 -
Trre2g06048 380 FunFam Protein arginine N-methyltransferase 6 23 169 - -
Trre2g06048 380 Gene3D - 171 376 - -
Trre2g06048 380 MobiDBLite consensus disorder prediction 1 23 - -
Trre2g06048 380 Gene3D Vaccinia Virus protein VP39 24 169 IPR029063 -
Trre2g06048 380 CDD AdoMet_MTases 69 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06048 Trre-Chr2 65496674 65502768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06048 30 343 C2H2 Transcription Factor Family AT3G12270 32.219 4.39e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06048 K11437 - jre:108993292 407.912