Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06016 ATGTCTTCTGGCGGCGATAGCGGCGGCGGCGCTGTTGGTAAGCTTTTCTTCTGCCACGTTTGCAGTCGGAGAGTTACCTGCTCCGATGATTCCGAGCCTTTTTGTCCAATCTGCTTCCAAGGTTTCCTCGAAGAATGTAATCAAATTCCCGAACCTAACCCTAACCCTAGTTTTCACTTCAGCTTCAACAACGACGATTCCTCCGATACCGATTCCGATTTCCCTTTCCATCCATTCGCTCTTCTACCTCTGTTGTTATCTTCTGCTTCAATTTCCAGAAGCCGACCCGAACCCGAGAGTTTCGACCCCTTCACTTTCCTTCAGAATCACCTTCACGGCCTTCATGCTGATGGTGCCAACATCCAATTCGAGATCAATCATCCTTCTGATTCTGAACCTGGTTTTCGCGTTCCCTCCAGTTTTGGTGATTACTTTCTCGGTCCTGGCCTTGAACAATTGATTCAGCAACTCGCCGAGAATGATCCTAACCGTTACGGAACACCACCGGCATCGAAAAACGCGGTTAAGAATCTTCCAACGGTAACTGTTGATGATGAATTGTTGAACTCGGAATTGAACCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAGGGTTCGCAGGTGAGGCAAATGCCTTGCAAGCATGTGTATCATGATGATTGCTTGCTTCCATGGCTTGAATTGCACAATTCTTGTCCTGTTTGTCGATATGAATTGCCTACTGATGATGCTGACTATGAGAATCGGGGTAGGGGTAATGATGACAATGGGTTGAGGTCTGTTGTTGATGGTAGCAGTACTGGTAGTGGTGCCGGCGGCAATGGCGGTGGAGGGGATTGGGAAATAGGCAAGAGGATTTGGATTGAAAGTTGTAAGTATCTAGAAAGAAATTATTTGGTGTTTAAAACTGGGAACTATCTTTTGCAGCTCAAGGGAAACAACTGCAGCAATACCCAAGTTGACTTGTTCCACAATAATTGGACAGGGATTTTTGTAGGTGCTATTTTCAGCTCATGCATTTGTGGAACTCCAAGGAATTATAAAGCAGAGCATGATTACAATCTCTTTTACAGTATTGAAAATTCACTCAGCATAATGCCACAAACAATTCTCAATGGCTTCCTCATTCTAGCAATAAAGTTTTTGCACTACCTATTCTCAAGGTGTTACAAATCAGCTACACCTTATACAATGATTGTGCCATTTTGGGTGGCTTTTACACTGTCAGTTTCCTATATGTCAGAGTTATCATTAACCTGA 1260 0.4405 MSSGGDSGGGAVGKLFFCHVCSRRVTCSDDSEPFCPICFQGFLEECNQIPEPNPNPSFHFSFNNDDSSDTDSDFPFHPFALLPLLLSSASISRSRPEPESFDPFTFLQNHLHGLHADGANIQFEINHPSDSEPGFRVPSSFGDYFLGPGLEQLIQQLAENDPNRYGTPPASKNAVKNLPTVTVDDELLNSELNQCAVCQDEFEKGSQVRQMPCKHVYHDDCLLPWLELHNSCPVCRYELPTDDADYENRGRGNDDNGLRSVVDGSSTGSGAGGNGGGGDWEIGKRIWIESCKYLERNYLVFKTGNYLLQLKGNNCSNTQVDLFHNNWTGIFVGAIFSSCICGTPRNYKAEHDYNLFYSIENSLSIMPQTILNGFLILAIKFLHYLFSRCYKSATPYTMIVPFWVAFTLSVSYMSELSLT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06016 419 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Trre2g06016 419 SMART ring_2 195 235 IPR001841 -
Trre2g06016 419 MobiDBLite consensus disorder prediction 246 276 - -
Trre2g06016 419 Pfam Ring finger domain 193 236 IPR001841 -
Trre2g06016 419 FunFam E3 ubiquitin-protein ligase RING1-like 156 242 - -
Trre2g06016 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 242 IPR013083 -
Trre2g06016 419 SUPERFAMILY RING/U-box 174 242 - -
Trre2g06016 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06016 Trre-Chr2 65270609 65275312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06016 139 251 C3H Transcription Factor Family AT5G01980 47.788 2.10e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06016 K11982 - gmx:100785289 344.739