Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06006 ATGGAAAACGACACCACCGCCACCAACAACGCCGCCGCGCCCAACGCCACGCCCAAACTTTCTTCAGGCGGAGTCAAATCCAACAACCACATCAATGAAGAAGAACATTCCAATTTGAATAGCGAGGAAAATATACCAGAAAAAATAGAAGAAAAAGAACAAGAAGAAGATGATGAAAACGAAGAAGAACAACAACCAACTGGATCTGAAACTACCGCTCAACAACCTTCGAGAACGCCTTTCACTAATCTCAGCCAGGTCGACGCTGACCTTGCCCTCGCTCGTACCCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTACGGAAGTTGGGAAGGTGGGAGCTATTTGCATGACGATGGAGATGATTTTGATGATCTACATGATGGCACTGATGAGGATGAGGATGATGAAGATGAAGATGATGATAACGAGGAGGAATATGAAGATGAAGACGCATTTGATGTCCATGCTCATGCTACTGTTGGAGAACATGATAATCCTATCATTGAATTTGACCCAGAGCTGTTTTCGAGTGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGCTGGCTCTTGCTGGAATACACGATCAGGACACTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAGCTTTCATATGAGGAACTACTGGCATTGGGTGAGGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTCTTGCCTCTTTACCTTCAGTCATCTATAAGACGGGGAGTGATCAACATGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGACGAGTCCTTGACAATTCTTTCCTGCAAACATCTGTACCATCCTGAATGCATTAACAACTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTACTTCTGGGAGCAACTTGTAG 1011 0.452 MENDTTATNNAAAPNATPKLSSGGVKSNNHINEEEHSNLNSEENIPEKIEEKEQEEDDENEEEQQPTGSETTAQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDEDEDDEDEDDDNEEEYEDEDAFDVHAHATVGEHDNPIIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHDQDTEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLASLPSVIYKTGSDQHGSNDSCVICRVDYEDDESLTILSCKHLYHPECINNWLKINKVCPVCSTEVSTSGSNL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06006 336 ProSiteProfiles Zinc finger RING-type profile. 285 326 IPR001841 -
Trre2g06006 336 MobiDBLite consensus disorder prediction 49 65 - -
Trre2g06006 336 SUPERFAMILY RING/U-box 276 331 - -
Trre2g06006 336 MobiDBLite consensus disorder prediction 29 48 - -
Trre2g06006 336 MobiDBLite consensus disorder prediction 1 86 - -
Trre2g06006 336 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 33 334 IPR043312 -
Trre2g06006 336 Coils Coil 45 65 - -
Trre2g06006 336 SMART ring_2 285 325 IPR001841 -
Trre2g06006 336 MobiDBLite consensus disorder prediction 110 158 - -
Trre2g06006 336 Pfam Ring finger domain 283 325 IPR001841 -
Trre2g06006 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 332 IPR013083 -
Trre2g06006 336 MobiDBLite consensus disorder prediction 133 158 - -
Trre2g06006 336 FunFam E3 ubiquitin ligase BIG BROTHER-related 251 332 - -
Trre2g06006 336 MobiDBLite consensus disorder prediction 1 28 - -
Trre2g06006 336 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06006 Trre-Chr2 65194512 65200056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06006 77 229 C3H Transcription Factor Family AT3G19910 51.948 9.35e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06006 K19045 - gmx:100787418 440.269