Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g06005 | ATGGAAAACGACACCACCGCCACCAACAACGCCGCCGCGCCCAACGCCACGCCCAAACTTTCTTCAGGCGGAGTCAAATCCAACAACCACATCAATGAAGAAGAACATTCCAATTTGAATAGCGAGGAAAATATACCAGAAAAAATAGAAGAAAAAGAACAAGAAGAAGATGATGAAAACGAAGAAGAACAACAACCAACTGGATCTGAAACTACCGCTCAACAACCTTCGAGAACGCCTTTCACTAATCTCAGCCAGGTCGACGCTGACCTTGCCCTCGCTCGTACCCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTACGGAAGTTGGGAAGGTGGGAGCTATTTGCATGACGATGGAGATGATTTTGATGATCTACATGATGGCACTGATGAGGATGAGGATGATGAAGATGAAGATGATGATAACGAGGAGGAATATGAAGATGAAGACGCATTTGATGTCCATGCTCATGCTACTGTTGGAGAACATGATAATCCTATCATTGAATTTGACCCAGAGCTGTTTTCGAGTGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGCTGGCTCTTGCTGGAATACACGATCTTTCGTTTTCAATTACAGAGGACACTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAGCTTTCATATGAGGAACTACTGGCATTGGGTGAGGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTCTTGCCTCTTTACCTTCAGTCATCTATAAGACGGGGAGTGATCAACATGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGACGAGTCCTTGACAATTCTTTCCTGCAAACATCTGTACCATCCTGAATGCATTAACAACTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTACTTCTGGGAGCAACTTGTAG | 1029 | 0.449 | MENDTTATNNAAAPNATPKLSSGGVKSNNHINEEEHSNLNSEENIPEKIEEKEQEEDDENEEEQQPTGSETTAQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDEDEDDEDEDDDNEEEYEDEDAFDVHAHATVGEHDNPIIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHDLSFSITEDTEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLASLPSVIYKTGSDQHGSNDSCVICRVDYEDDESLTILSCKHLYHPECINNWLKINKVCPVCSTEVSTSGSNL | 342 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g06005 | 342 | FunFam | E3 ubiquitin ligase BIG BROTHER-related | 257 | 338 | - | - | |
Trre2g06005 | 342 | Pfam | Ring finger domain | 289 | 331 | IPR001841 | - | |
Trre2g06005 | 342 | MobiDBLite | consensus disorder prediction | 49 | 65 | - | - | |
Trre2g06005 | 342 | MobiDBLite | consensus disorder prediction | 29 | 48 | - | - | |
Trre2g06005 | 342 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
Trre2g06005 | 342 | Coils | Coil | 45 | 65 | - | - | |
Trre2g06005 | 342 | MobiDBLite | consensus disorder prediction | 114 | 158 | - | - | |
Trre2g06005 | 342 | SUPERFAMILY | RING/U-box | 282 | 337 | - | - | |
Trre2g06005 | 342 | SMART | ring_2 | 291 | 331 | IPR001841 | - | |
Trre2g06005 | 342 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED | 33 | 340 | IPR043312 | - | |
Trre2g06005 | 342 | MobiDBLite | consensus disorder prediction | 133 | 158 | - | - | |
Trre2g06005 | 342 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Trre2g06005 | 342 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 338 | IPR013083 | - | |
Trre2g06005 | 342 | MobiDBLite | consensus disorder prediction | 66 | 86 | - | - | |
Trre2g06005 | 342 | ProSiteProfiles | Zinc finger RING-type profile. | 291 | 332 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g06005 | Trre-Chr2 | 65194512 | 65200056 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g06005 | 77 | 226 | C3H Transcription Factor Family | AT3G19910 | 52.980 | 3.01e-34 | 124 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g06005 | K19045 | - | gmx:100787418 | 433.335 |