Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06005 ATGGAAAACGACACCACCGCCACCAACAACGCCGCCGCGCCCAACGCCACGCCCAAACTTTCTTCAGGCGGAGTCAAATCCAACAACCACATCAATGAAGAAGAACATTCCAATTTGAATAGCGAGGAAAATATACCAGAAAAAATAGAAGAAAAAGAACAAGAAGAAGATGATGAAAACGAAGAAGAACAACAACCAACTGGATCTGAAACTACCGCTCAACAACCTTCGAGAACGCCTTTCACTAATCTCAGCCAGGTCGACGCTGACCTTGCCCTCGCTCGTACCCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTACGGAAGTTGGGAAGGTGGGAGCTATTTGCATGACGATGGAGATGATTTTGATGATCTACATGATGGCACTGATGAGGATGAGGATGATGAAGATGAAGATGATGATAACGAGGAGGAATATGAAGATGAAGACGCATTTGATGTCCATGCTCATGCTACTGTTGGAGAACATGATAATCCTATCATTGAATTTGACCCAGAGCTGTTTTCGAGTGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGCTGGCTCTTGCTGGAATACACGATCTTTCGTTTTCAATTACAGAGGACACTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAGCTTTCATATGAGGAACTACTGGCATTGGGTGAGGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTCTTGCCTCTTTACCTTCAGTCATCTATAAGACGGGGAGTGATCAACATGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGACGAGTCCTTGACAATTCTTTCCTGCAAACATCTGTACCATCCTGAATGCATTAACAACTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTACTTCTGGGAGCAACTTGTAG 1029 0.449 MENDTTATNNAAAPNATPKLSSGGVKSNNHINEEEHSNLNSEENIPEKIEEKEQEEDDENEEEQQPTGSETTAQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDEDEDDEDEDDDNEEEYEDEDAFDVHAHATVGEHDNPIIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHDLSFSITEDTEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLASLPSVIYKTGSDQHGSNDSCVICRVDYEDDESLTILSCKHLYHPECINNWLKINKVCPVCSTEVSTSGSNL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06005 342 FunFam E3 ubiquitin ligase BIG BROTHER-related 257 338 - -
Trre2g06005 342 Pfam Ring finger domain 289 331 IPR001841 -
Trre2g06005 342 MobiDBLite consensus disorder prediction 49 65 - -
Trre2g06005 342 MobiDBLite consensus disorder prediction 29 48 - -
Trre2g06005 342 MobiDBLite consensus disorder prediction 1 86 - -
Trre2g06005 342 Coils Coil 45 65 - -
Trre2g06005 342 MobiDBLite consensus disorder prediction 114 158 - -
Trre2g06005 342 SUPERFAMILY RING/U-box 282 337 - -
Trre2g06005 342 SMART ring_2 291 331 IPR001841 -
Trre2g06005 342 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 33 340 IPR043312 -
Trre2g06005 342 MobiDBLite consensus disorder prediction 133 158 - -
Trre2g06005 342 MobiDBLite consensus disorder prediction 1 28 - -
Trre2g06005 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 338 IPR013083 -
Trre2g06005 342 MobiDBLite consensus disorder prediction 66 86 - -
Trre2g06005 342 ProSiteProfiles Zinc finger RING-type profile. 291 332 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06005 Trre-Chr2 65194512 65200056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06005 77 226 C3H Transcription Factor Family AT3G19910 52.980 3.01e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06005 K19045 - gmx:100787418 433.335