Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06003 ATGAAGTTAATGCACTGCCATGAACTGTGCAAGCCAGTTACTATCTTGATTCTAGTTAACTTAGCTCTTGCTTTTGTCAATTTACTTCTTAAAATGGTTCTCAATGAAGGAATGGACTACATGTCCATTGTAACATATCGACAAGCTATTTCATTTATCTTCATGGCACCTATTGCATGGTTCTATGAAAGGAAACACAAATTGGAGGCTCACATAATATGTCTACTTTTTCTCTCTGCTCTTGTTGGAGTAACAATCCCCCAATACTTGTTTCTTCTTGGACTTCAGTATACATCTGCCACATTCTCATGTGCATTCCTCAACATGGTTCCTGTATTTACATTCATCATGTCACTACCATTTGGGATAGAGAAGGTGAACATGAAATGCAAGAGTGGTAAAGCCAAAATCTTGGGAGCTATTGTGTGCATTGGTGGAGTTTTGTTATTAGCCCTTTATAAAGGAATTTCCTTTAACAGCCCACAATCTGAACACATAGCCAATACATATACAAGTGCACCTCCCAAGTTAGAGAAATGGATTATAGGTTCAATACTTCTGACTGCAGGTTGCATCATGTGGTCTTCTTGGTTTGTAATACAAGCTAAGATTAGCAAAAAATATCCATGTCAATACTCTAGCACAGCTATTTTGTCACTTTTTGCTGCTATTCAATCAGCAATATTAACTTTGGTCATCAAGGGAAACAATGCCTCATGGATCCTCAAAGGAAAGCTAGAAATATTGTGTGTAGTATATGCTGGATTGGTGGGGTCAGGCCTGTGTTATGTGGCAATGTCATGGTGTGTCAAACAAAGAGGTCCAGTTTTTACTGCAGCATTTACCCCTCTTTTACAAATATTTGTGGCTGTGCTTGATTTCACTATACTAAAGGAGGAAATATACTTAGGAAGTATTGCAGGCTCTGTGTTGGTTATTGTTGGCATGTATATTCTTTTATTGGGAAAAAGTATGGAAGGAGAGCAATGTGTCACGAAGGATACACAAGCAAATCAAGATGTAGAATGTCAATGA 1035 0.3787 MKLMHCHELCKPVTILILVNLALAFVNLLLKMVLNEGMDYMSIVTYRQAISFIFMAPIAWFYERKHKLEAHIICLLFLSALVGVTIPQYLFLLGLQYTSATFSCAFLNMVPVFTFIMSLPFGIEKVNMKCKSGKAKILGAIVCIGGVLLLALYKGISFNSPQSEHIANTYTSAPPKLEKWIIGSILLTAGCIMWSSWFVIQAKISKKYPCQYSSTAILSLFAAIQSAILTLVIKGNNASWILKGKLEILCVVYAGLVGSGLCYVAMSWCVKQRGPVFTAAFTPLLQIFVAVLDFTILKEEIYLGSIAGSVLVIVGMYILLLGKSMEGEQCVTKDTQANQDVECQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06003 344 Pfam EamA-like transporter family 14 151 IPR000620 GO:0016020
Trre2g06003 344 Pfam EamA-like transporter family 182 320 IPR000620 GO:0016020
Trre2g06003 344 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 324 - -
Trre2g06003 344 PANTHER WAT1-RELATED PROTEIN 12 327 IPR030184 GO:0016020|GO:0022857
Trre2g06003 344 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06003 Trre-Chr2 65185645 65187447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g06003 8 254 Nodulin-like Gene Family AT3G30340 45.020 8.48e-76 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06003 - - gmx:100802053 559.681