Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06001 ATGGCGGATGAAAACAACAACAACACAGTCCCAGTCACACTCACGGACGATTCCATTCCTGATGATCGAGATAAAACAACAGCTACCCTTGATGTTCCCGCCGAAACGGTGCCGTTGAAGGTCGATGACGTGGCACAAACTACGAATGTTGTTGTTGCTGCGGAAACGGTGTCGTTGAACGACGGTGAAGGAAAAGGAGGTTCGGTTAAAGAAGCTGTGAATATTGTCGCTGAAACGACGTCGTTGAAGGATGGTGTAGTTTCGGTTGAATGTGATGACGTGGCAGCCGGAGATTCTGTTAAAGTTCCCGCTGCGCCAGTGTTGTACCGTAGAAGGAAAAAGAAACGAGGAAGAAAGAGTTTTGCAGAAATTGCTAAGATGAAGGAAGAGGAAGAAGCGTTAATGAAAACGGCAGAGAATGGAACGAACGAACAAACTGGTGAAGGTGATGATGACGTGGCTGCCGGAGGTTCTATTTCTGTTGAGGTTGCTAACGTGGCAACGGAAAAGAAGCGCCGTAGAAAGAGGAAAACGGAGAAGGAAGCAGAAATTGGAGAAGCTGCTGACGTGGTGGTGGAAGATGCTGGTTCTGTTGATGTCAGAAAGAGTGCACGGTCGAGGAAGATTATATCGTTTAAGGAGGATGAGTATATATCAGATTTAGACGAGGAAGTGAAGACTAAGCGAAAACGTGGTAGGAAGAAGAAGAATATCGCTGATTCTGATGAAAATAATGTTGTAGAAGAGGAAAGTGTGAAGGGTGAGAAGAAGAAACCTGGTAGGAAGAAGAAGACTGTTGTTGATTCTGTTGAGAATGATGGTGCAGAAGAAGTGGATAATGTAAAGGAAGAGAGGAAGAAACCTGGTAGAAAAAGAAAAGAAATTTTTAGTTCTGGAGATGAATTTGAAGCCGAACAGAAGGGGGGGAGTGTGACAAAAGAGAAGAAGAAACCGGGTAGGAAAACAAAAATAATTTCTAATGAAACAGAAGAGGGAGAAGATGACGAAGCTGGACTAGATGGGGAAAATGGTAGTTTTGTAAAGGAAGAGGAACAGGACCGTTGCGAAATTGACACGACTTTATCTGATGATAATAAAGGTTATTCTCTAAGGAGGACTGCTGCAGTGAAGAAACCTAAATACATTGAACCGAAGGTGACAAAATTCACCGATAGAACTAAGTGGATTGAAGAAGAGTCCTTAATGTGTCATCAATGTCAGAGAAATGATAAGGGCAGGGTTGTCAGATGCACAAAATGCAAACGGAAAAGATATTGTGTATGCTGTATAAACAATTGGTATCCTCACTTGAAAGAAGATGAAATTGCTAAGGCATGTCCGGTGTGCTGTGGTAATTGCAATTGCAAAGCATGCTTGCGATCAACTACACTTATCAAGGCAATTAAAAAAAACGATAAGGAAGCTAACAAAGATCATGAGATTGAGCTGTCCAAGTATATGTTGAATGAACTTCTTCCGTATTTAAGACGATTGGATGAAGAACAAATGGTGGAGAGGGAGATAGAAGCGAAGAGACAAGGGCTCTCACTTTCTGAACTAAAAATAGTAGTAGCCGACTGCCCTAAAAATGAGCGAATGTATTGTGACAACTGCAAAACGTCAATATTTGACTACCATAGAAGTTGTACAAAATGCCCTTTTGACATTTGTCTCCTCTGTTGCGCCGAGCTTCGTGGTGGGAAGCTCCTAGGCGGTGCTGATTCAATTGAGTTTGAGTTTATCTCCCGTGGGTATGATTATCTGCATGGTGGAAAGGAAAAGAAAATAAAAGAAAATGAACCTCGTGCTGCTGCCCAGCCTGAGATTCGTGAATGGTCAAGATCTGGATGGCATGCATATAGTGACGGCAGCATTCCCTGTCCAAAAGCCAATAATGACTGTGATCATGGTGTGCTTGAACTGAGAAGCATACTTGGACCAAATTACATCTCTGAGTTGGTATGTAATGCAAAAGAACTTGAAGAAACACTTAATCTTCAAGTTGCAGAGGAGGCTCTTGATAGTAGGTGTTCTTGTTTGAAGCCTGTTAGGAATGCAAATAATGTACGAAATAACACAAGGAAGGCAGCTTCTCGTGAAGATTCCAGTGACAACTTCTTATACTGTCCCAGGGCTGTAGATTTACACAAAGATGATTTTAGACACTTTCAATGGCACTGGAGCAAAGGGGAGCCGGTAATTGTCAGCAATGTACTTGAATGTACGTCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATAAGCAATACCAAACACAAATCACTTTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGGTGATATTAATGTGCACCAATTCTTTACTGGGTACACAAATGGTCGCTCAGATTGGCTTAACTGGCCTCAGGTTTTGAAATTGAAAGACTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCCCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAAATCCTTTCAAAGGTGTCCTTAACCTTGCTGCGAAGTTGCCTAAAGGTGTTATACAGCCTGACATGGGTCCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGGCGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCCGATGCAGTAAATGTGTTGACTCATATTGCTAAAGTGGAATTGAAACCTGATGGTATCAATGCCATTAAGAAACTTAAACAAGAGCACCTCAAGCAAGACAAGCGGGAGCTATGTCTACATGGTGATGATCAGGATGGAGAGACAAATGTTGGTGGTGTGCTTGATACTTCACCGTCTTCCACAAATGCTTCAGACAAGCAAAATAGTGTCCGAGTCATGGAAAATGAAACGGGATTATGCAATGGGAAAGCTAATGATGATGGCCTTTCTTCTGGATCAGAGCTCAAAGAGGGGGATTCTTTAGATGGTGCTCTCTGGGATATATTTCGGAGAGAGGATGTACCGAAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGGCATGTGCATTGCTCTCCTTTAAAGCAGGTTGTTCACCCTATCCATGATCAGACATTTTTTTTGACTATTGAGCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTGTTCAGAAGTTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTTCGCAATCTGAAATCATGCACAAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTGGGCGAGTGCTTTCGTTTGACAGAAGAATTCCGCAAACTTCCTATAAATCACAGGTCCACAGAGGACAAATTGGAGGTGAAGAAAATGATTATATATGCCATGCTTGATCTGGTCGAAAAGTTGGAGGAAGTGAGGTCTGGAAAAACTGAGGTTTCAAAGTAA 3444 0.4236 MADENNNNTVPVTLTDDSIPDDRDKTTATLDVPAETVPLKVDDVAQTTNVVVAAETVSLNDGEGKGGSVKEAVNIVAETTSLKDGVVSVECDDVAAGDSVKVPAAPVLYRRRKKKRGRKSFAEIAKMKEEEEALMKTAENGTNEQTGEGDDDVAAGGSISVEVANVATEKKRRRKRKTEKEAEIGEAADVVVEDAGSVDVRKSARSRKIISFKEDEYISDLDEEVKTKRKRGRKKKNIADSDENNVVEEESVKGEKKKPGRKKKTVVDSVENDGAEEVDNVKEERKKPGRKRKEIFSSGDEFEAEQKGGSVTKEKKKPGRKTKIISNETEEGEDDEAGLDGENGSFVKEEEQDRCEIDTTLSDDNKGYSLRRTAAVKKPKYIEPKVTKFTDRTKWIEEESLMCHQCQRNDKGRVVRCTKCKRKRYCVCCINNWYPHLKEDEIAKACPVCCGNCNCKACLRSTTLIKAIKKNDKEANKDHEIELSKYMLNELLPYLRRLDEEQMVEREIEAKRQGLSLSELKIVVADCPKNERMYCDNCKTSIFDYHRSCTKCPFDICLLCCAELRGGKLLGGADSIEFEFISRGYDYLHGGKEKKIKENEPRAAAQPEIREWSRSGWHAYSDGSIPCPKANNDCDHGVLELRSILGPNYISELVCNAKELEETLNLQVAEEALDSRCSCLKPVRNANNVRNNTRKAASREDSSDNFLYCPRAVDLHKDDFRHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQISNTKHKSLLDVKAIDCLDWCEGDINVHQFFTGYTNGRSDWLNWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPYKEYTNPFKGVLNLAAKLPKGVIQPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAKVELKPDGINAIKKLKQEHLKQDKRELCLHGDDQDGETNVGGVLDTSPSSTNASDKQNSVRVMENETGLCNGKANDDGLSSGSELKEGDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCSPLKQVVHPIHDQTFFLTIEHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPINHRSTEDKLEVKKMIIYAMLDLVEKLEEVRSGKTEVSK 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06001 1147 MobiDBLite consensus disorder prediction 929 957 - -
Trre2g06001 1147 MobiDBLite consensus disorder prediction 1 15 - -
Trre2g06001 1147 MobiDBLite consensus disorder prediction 938 957 - -
Trre2g06001 1147 SUPERFAMILY Clavaminate synthase-like 719 1127 - -
Trre2g06001 1147 Gene3D Cupin 707 1114 - -
Trre2g06001 1147 Coils Coil 124 144 - -
Trre2g06001 1147 MobiDBLite consensus disorder prediction 138 187 - -
Trre2g06001 1147 SMART cupin_9 821 1105 IPR003347 -
Trre2g06001 1147 ProSiteProfiles Zinc finger RING-type profile. 403 449 IPR001841 -
Trre2g06001 1147 MobiDBLite consensus disorder prediction 236 328 - -
Trre2g06001 1147 Coils Coil 650 670 - -
Trre2g06001 1147 MobiDBLite consensus disorder prediction 1 26 - -
Trre2g06001 1147 MobiDBLite consensus disorder prediction 225 345 - -
Trre2g06001 1147 ProSiteProfiles JmjC domain profile. 840 1105 IPR003347 -
Trre2g06001 1147 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 114 1140 IPR045109 GO:0032454|GO:0033169
Trre2g06001 1147 Pfam JmjC domain, hydroxylase 992 1088 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06001 Trre-Chr2 65166515 65179208 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g06001 JmjC 1.4e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06001 K15601 - gmx:100780803 1162.13