Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g06000 ATGAAAGAGAAAATTACTCGTGTTGCTGCCCAGCCTGAGATTCGTGAATGGTCTAGATCTGGATGGCATGCATATAGTGACGGTAGCATTCTCTGTCCAAAAGCCAATAATGACTGTGATCATGGTGTCCTTGAACTGAGAAGCATACTTGGACCAAATTTCATCTCTGACTTGGTATGTAAAGCAAAAGAACTCGAAGAAACACTTAATCTTCAAGATGCAGAGGAGGCTCTTAATAGTAGGTGTTCTTGTTTGAAGCCTGTTTGGAATGCAGATGATATACACAATAACATAAGGAAAGCAGCTTCTCGTGAAGATTCCAGTGACAACTTCTTATATTGTCCCAGGGCTGTAGATCACAAAGAGAATTTTAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATATACTTGAATCTACATCTGGTTTAAGCTGGGAACCGCTTGTCATGTGGCGTGCATTCCGTCAGATAAGAAATACCAAGCACAAAACACTTTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTCTGAGGTAGATATTAATGTGCACCAATTCTTTACTGGGTACACAAAAGGTCGCTTGGATTGGCTTAAGTGGCCTCAGGTTTTGAAATTGAAAGACTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCCCGTCATTGTGCCGAGTTCATATCTTCCTTGCCATATAAAGAATATACAAATCCTTTCAAAGGTGTCCTTAACCTTGCTGCGAAGTTGCCTGTAAATGTTATACAGCCAAACATGGGCCCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGGCGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCCGATACAGTAAATGTGTTGACTCATGTTGCTAAAGTGGAATTGAAACCTGATGGTATCAATGCCATTAAGAAACTTAAACAAGAGCACCTCAAGCAAGACAAGTGGGAGCTATGTCTACATGGTGATGATCAGGATGGAGAGACCAATGTAGTTGGTGTGCTTGATATTTCACCGTCTTCCACAAATGCTTCTGACAAGCAAAATACTGTCCGAGTCATGGAAAATGAAAAGGGATTATGCAATGGGAAGACTGTTGATTCAGTTCATCAACACTCCGGTGCTGCTGATGATGACCTTTCTTCTAGATCAGAGGTCAAAGAGGGGGATTCTTTTGATGGTGCTCTCTGGGATATATTTCGGAGAGAGGATGTACCGGAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGGCATGTGCATTGCTGTCCTTTAAAGCAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTGACTCTGGAGCATAAGAGGAAACTTAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTACTCAGAAGCTAGGAGATGCTGTTTTCATTCCTGCCGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTCGGGCTTGATTTTGTCTCACCTGAAAATGTTGGTGAGTGTTTCCGTTTGACAGAGGAATGCCGTAAGCTTCCTATAAACCACATGTCCGCCAAGGACAAGTTGGAGGTGAAGAAAATGACTATATATGCTATGCTTGATGTGGTTGAAAAATTGGAGGAAGCAAGGTGGAAGAAACCAATGATTTAG 1680 0.419 MKEKITRVAAQPEIREWSRSGWHAYSDGSILCPKANNDCDHGVLELRSILGPNFISDLVCKAKELEETLNLQDAEEALNSRCSCLKPVWNADDIHNNIRKAASREDSSDNFLYCPRAVDHKENFRHFQWHWSKGEPVIVSNILESTSGLSWEPLVMWRAFRQIRNTKHKTLLDVKAIDCLDWSEVDINVHQFFTGYTKGRLDWLKWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPYKEYTNPFKGVLNLAAKLPVNVIQPNMGPKTYIAYGFAQELGRGDSVTKLHCDMSDTVNVLTHVAKVELKPDGINAIKKLKQEHLKQDKWELCLHGDDQDGETNVVGVLDISPSSTNASDKQNTVRVMENEKGLCNGKTVDSVHQHSGAADDDLSSRSEVKEGDSFDGALWDIFRREDVPELEEYLKKHFREFRHVHCCPLKQVIHPIHDQTFYLTLEHKRKLKEEYGIEPWTFTQKLGDAVFIPAGCPHQVRNLKSCIKVGLDFVSPENVGECFRLTEECRKLPINHMSAKDKLEVKKMTIYAMLDVVEKLEEARWKKPMI 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g06000 559 Gene3D Cupin 107 528 - -
Trre2g06000 559 ProSiteProfiles JmjC domain profile. 244 519 IPR003347 -
Trre2g06000 559 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 12 553 IPR045109 GO:0032454|GO:0033169
Trre2g06000 559 MobiDBLite consensus disorder prediction 374 398 - -
Trre2g06000 559 SMART cupin_9 225 519 IPR003347 -
Trre2g06000 559 Coils Coil 55 75 - -
Trre2g06000 559 SUPERFAMILY Clavaminate synthase-like 122 537 - -
Trre2g06000 559 MobiDBLite consensus disorder prediction 382 398 - -
Trre2g06000 559 Pfam JmjC domain, hydroxylase 408 502 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g06000 Trre-Chr2 65153879 65160851 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g06000 JmjC 2e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g06000 K15601 - gmx:100780803 820.461