Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05997 ATGGCGGAGGAAGAGAACGACGAAGTCACATTTACAGTCAAAATCACAGTCACACTCACCATTCCTCCTCCACAAACACAACAGCCTACTACTGTGGATGCTAACGCCGAAACAGTGCCGTCGAATGGTGATGAAGTGGCACGAGCTATTATATTATTAAGCGACGACGATGATGGTTCGGTTAAAGGTGATGACGTGGTAGTAATAGAAGATTCTGATAGTGATCGAGAAAAACAAGATATGGAAACAGCGTCGTTAAACAACGGCGATGATGTTGAAGCAGCTGAAGAAGAATCTGTTCCTGATCGCGAAAAACAAGCTACGGTGTCATTGACCGACGATGAACGTTCCGTTGAAGCTGACGACGTGGCAGCCGGAAGCTCTTCGTTTGGAAAGAAACGCGGCAGAAAGAGAAAAAAAGTGAAGGAAGCTGAAACGTATCCTTTAAGGGGAAATGCTAAGTGGATTGACGAGTCCAAGTCCACAACCACAATGTGCCATCAATGTCAAAGAAATGATAAGGGCAGGGTTGTCAGATGCACAAAATGCAAACGGAAAAGATTTTGCATACCTTGTTTAACTAATTGGTATCCTAAATTGAAAGAGAGTGATGTTGCCGAGGCGTGTCCTGTATGCCGTGATAATTGCAATTGCAAAGCATGCTTGCGATCTTTTAAAATCATCAATCAAATTAAGCATACGGCTAAAAGTAAAGCCAACAAAGACGAGGAGGTTGAGTTCTCTAAGTATTTGTTGAAAGGGCTTCTTCCATATTTAAGACAGTTGGATGAAGAACAGATGATTGAGAAGAAAAGAGAAGCCAATAGACAAGGGATCTCACTCTCAAAGCTAAAAATAAAATCGGCTGATTATTCTAAAGATGAGCGTGTGTACTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAACCTGTACAAAATGCTCTTTTGACCTTTGCCTGCTGTGTTGCTGCGAGCTTCGTGGTGGGCAACTTCTAGGTGGTGCGGATCCAATTGAGCTCGAGTATATTTTCCGAGGTCGCGATTATCTACATGGTGGAACTGCAGAAAAACAGGTTAAAGGAAATGCATCACAGGCTCAAGACGAGCCTACGACTCGTGACTGGTCAAGATCTGGGTGGCGTGCAAATGGAGATGGTAGCATTCCTTGTCCGAAAGCCAATAATGAATGTGATCATGGTTTCCTTGAACTGAGAAGGATACTTCCTCCAAATTGCATCTCAGAGTTAGTATGTAAAGCAAAAGAACTTGCAGAAACATTTAAGCTGCAAGATGCAGAGGAGACTCTTGATAATGGGTGTTCCTGCTTGAAGCTTGTTAGGAACGCGAATGATATAAACAATAACACAAGGAAGGCAGCTTTTCGTGAAGATTCCGATGACAACTTTTTATTTTGTCCTAGAGCTGTAGATGTGCATCGTGAAGATTTAAGACATTTTCAGTGGCATTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTCGAATGTTCATCTGGTTTAAGTTGGGAACCGCTAGTCATGTGGCGTGCATTCCGTCAAATAACCAATTCCAAACACGATGTATTTTTGGATGTGAAGGCAGTTAATTGCTTAGATTGGTGTGAGGGAGATATTAATATCCACCAATTCTTTACTGGGTACATAAAAGGTCGAATGGATTGGCTTAATTGGCCTCAAGTGTTGAAATTAAAAGATTGGCCTCCTTCTGATTTATTTCAGGAACTTTTACCTCGTCATCATGCTGAGTTCATATCTTTCTTGCCTTATAAAGAATATACAGATCCTTTCAAAGGTTCTCTCAACCTTGTTGTGAAGTTGCCGGATTATTGTGTAATGCCAGACATGGGGCCAAGAACATATATTGCTTATGGATTTGCTCAGGAGTTTGGACGTGGTGATTCCGTGACTAAGCTCCATTGTGATGCGTCTGATGCAGTAAATGTGTTGACTCATATCGCTAAAGTGGAACTGAAACCTGAGCAAATTGCTGCTATTAAGAAATTGGCACGTAGACACCTTGAGCAAGATAAGAGGGAGCTAAATGTTGATGGGAAGGTGGTTGAGATATTTCATCAGCACTCTGGCACTAATGATGATGACCTGTCTTGTAGGCCAGAACTCAAAGAGGTTGAGAAAGTAACAATGAAACAAGAAAACAGTTCATTTGCTGGAGGGGATTCCTTGGACGGTGCTCTCTGGGATATTTTTCGCAGAGAGGATGTACCCAAATTACAGGAATATATTAAGAAGTATTTCAGAGAGTTCAGTCATATCTATTGCAGTCCTTTAAAGCAGATTATTCACCCTATTCATGATCAAACCATTTATCTAACTATGGACCATAAGAAGAAACTTAACGAGGAGTATGGAGTTGAGCCTTGGACTTTTATTCAAAAATTAGGAGATGCCGTTTTCATTCCTGCTGGTTTGCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGCACTTGATTTTGTCTCTCCTGAACATATTGGCGAGTGCTTCCGTTTGACAGAGGAATGTCGCAAGCTTCCGATAAATCACAAATCAGCTGAGGACAAATTTGAGGTGAAGAAAATTGTCATACATGCTATGCTTGACGTGGTTGAAAAATTGGAGAAAGCAAGAATTGGGGAAACCAAGGTTCCTGTGTAA 2691 0.4158 MAEEENDEVTFTVKITVTLTIPPPQTQQPTTVDANAETVPSNGDEVARAIILLSDDDDGSVKGDDVVVIEDSDSDREKQDMETASLNNGDDVEAAEEESVPDREKQATVSLTDDERSVEADDVAAGSSSFGKKRGRKRKKVKEAETYPLRGNAKWIDESKSTTTMCHQCQRNDKGRVVRCTKCKRKRFCIPCLTNWYPKLKESDVAEACPVCRDNCNCKACLRSFKIINQIKHTAKSKANKDEEVEFSKYLLKGLLPYLRQLDEEQMIEKKREANRQGISLSKLKIKSADYSKDERVYCDNCKTSIFDYHRTCTKCSFDLCLLCCCELRGGQLLGGADPIELEYIFRGRDYLHGGTAEKQVKGNASQAQDEPTTRDWSRSGWRANGDGSIPCPKANNECDHGFLELRRILPPNCISELVCKAKELAETFKLQDAEETLDNGCSCLKLVRNANDINNNTRKAAFREDSDDNFLFCPRAVDVHREDLRHFQWHWSKGEPVIVSNVLECSSGLSWEPLVMWRAFRQITNSKHDVFLDVKAVNCLDWCEGDINIHQFFTGYIKGRMDWLNWPQVLKLKDWPPSDLFQELLPRHHAEFISFLPYKEYTDPFKGSLNLVVKLPDYCVMPDMGPRTYIAYGFAQEFGRGDSVTKLHCDASDAVNVLTHIAKVELKPEQIAAIKKLARRHLEQDKRELNVDGKVVEIFHQHSGTNDDDLSCRPELKEVEKVTMKQENSSFAGGDSLDGALWDIFRREDVPKLQEYIKKYFREFSHIYCSPLKQIIHPIHDQTIYLTMDHKKKLNEEYGVEPWTFIQKLGDAVFIPAGLPHQVRNLKSCIKVALDFVSPEHIGECFRLTEECRKLPINHKSAEDKFEVKKIVIHAMLDVVEKLEKARIGETKVPV 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05997 896 MobiDBLite consensus disorder prediction 359 380 - -
Trre2g05997 896 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 76 887 IPR045109 GO:0032454|GO:0033169
Trre2g05997 896 SMART cupin_9 586 854 IPR003347 -
Trre2g05997 896 MobiDBLite consensus disorder prediction 69 137 - -
Trre2g05997 896 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 161 236 IPR018866 -
Trre2g05997 896 MobiDBLite consensus disorder prediction 22 38 - -
Trre2g05997 896 MobiDBLite consensus disorder prediction 22 41 - -
Trre2g05997 896 MobiDBLite consensus disorder prediction 69 84 - -
Trre2g05997 896 ProSiteProfiles Zinc finger RING-type profile. 166 213 IPR001841 -
Trre2g05997 896 MobiDBLite consensus disorder prediction 98 121 - -
Trre2g05997 896 SUPERFAMILY Clavaminate synthase-like 484 877 - -
Trre2g05997 896 MobiDBLite consensus disorder prediction 360 380 - -
Trre2g05997 896 Gene3D Cupin 471 863 - -
Trre2g05997 896 Pfam JmjC domain, hydroxylase 741 837 IPR003347 -
Trre2g05997 896 ProSiteProfiles JmjC domain profile. 605 854 IPR003347 -
Trre2g05997 896 FunFam Transcription factor jumonji domain-containing protein 469 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05997 Trre-Chr2 65135419 65141067 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g05997 JmjC 3.2e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05997 K15601 - gmx:100780803 1054.66