Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05996 ATGGCGGAGGAAGAGAACGACGAAGTCACATTTACAGTCAAAATCACAGTCACACTCACCATTCCTCCTCCACAAACACAACAGCCTACTACTGTGGATGCTAACGCCGAAACAGTGCCGTCGAATGGTGATGAAGTGGCACGAGCTATTATATTATTAAGCGACGACGATGATGGTTCGGTTAAAGGTGATGACGTGGTAGTAATAGAAGATTCTGATAGTGATCGAGAAAAACAAGATATGGAAACAGCGTCGTTAAACAACGGCGATGATGTTGAAGCAGCTGAAGAAGAATCTGTTCCTGATCGCGAAAAACAAGCTACGGTGTCATTGACCGACGATGAACGTTCCGTTGAAGCTGACGACGTGGCAGCCGGAAGCTCTTCGTTTGGAAAGAAACGCGGCAGAAAGAGAAAAAAAGTGAAGGAAGCTGAAACGTATCCTTTAAGGGGAAATGCTAAGTGGATTGACGAGTCCAAGTCCACAACCACAATGTGCCATCAATGTCAAAGAAATGATAAGGGCAGGGTTGTCAGATGCACAAAATGCAAACGGAAAAGATTTTGCATACCTTGTTTAACTAATTGGTATCCTAAATTGAAAGAGAGTGATGTTGCCGAGGCGTGTCCTGTATGCCGTGATAATTGCAATTGCAAAGCATGCTTGCGATCTTTTAAAATCATCAATCAAATTAAGCATACGGCTAAAAGTAAAGCCAACAAAGACGAGGAGGTTGAGTTCTCTAAGTATTTGTTGAAAGGGCTTCTTCCATATTTAAGACAGTTGGATGAAGAACAGATGATTGAGAAGAAAAGAGAAGCCAATAGACAAGGGATCTCACTCTCAAAGCTAAAAATAAAATCGGCTGATTATTCTAAAGATGAGCGTGTGTACTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAACCTGTACAAAATGCTCTTTTGACCTTTGCCTGCTGTGTTGCTGCGAGCTTCGTGGTGGGCAACTTCTAGGTGGTGCGGATCCAATTGAGCTCGAGTATATTTTCCGAGGTCGCGATTATCTACATGGTGGAACTGCAGAAAAACAGGTTAAAGGAAATGCATCACAGGCTCAAGACGAGCCTACGACTCGTGACTGGTCAAGATCTGGGTGGCGTGCAAATGGAGATGGTAGCATTCCTTGTCCGAAAGCCAATAATGAATGTGATCATGGTTTCCTTGAACTGAGAAGGATACTTCCTCCAAATTGCATCTCAGAGTTAGTATGTAAAGCAAAAGAACTTGCAGAAACATTTAAGCTGCAAGATGCAGAGGAGACTCTTGATAATGGGTGTTCCTGCTTGAAGCTTGTTAGGAACGCGAATGATATAAACAATAACACAAGGAAGGCAGCTTTTCGTGAAGATTCCGATGACAACTTTTTATTTTGTCCTAGAGCTGTAGATGTGCATCGTGAAGATTTAAGACATTTTCAGTGGCATTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTCGAATGTTCATCTGGTTTAAGTTGGGAACCGCTAGTCATGTGGCGTGCATTCCGTCAAATAACCAATTCCAAACACGATGTATTTTTGGATGTGAAGGCAGTTAATTGCTTAGATTGGTGTGAGGGAGATATTAATATCCACCAATTCTTTACTGGGTACATAAAAGGTCGAATGGATTGGCTTAATTGGCCTCAAGTGTTGAAATTAAAAGATTGGCCTCCTTCTGATTTATTTCAGGAACTTTTACCTCGTCATCATGCTGAGTTCATATCTTTCTTGCCTTATAAAGAATATACAGATCCTTTCAAAGGTTCTCTCAACCTTGTTGTGAAGTTGCCGGATTATTGTGTAATGCCAGACATGGGGCCAAGAACATATATTGCTTATGGATTTGCTCAGGAGTTTGGACGTGGTGATTCCGTGACTAAGCTCCATTGTGATGCGTCTGATGCAGTAAATGTGTTGACTCATATCGCTAAAGTGGAACTGAAACCTGAGCAAATTGCTGCTATTAAGAAATTGGCACGTAGACACCTTGAGCAAGATAAGAGGGAGCTAAATGTTGATGGGAAGGTGGTTGAGATATTTCATCAGCACTCTGGCACTAATGATGATGACCTGTCTTGTAGGCCAGAACTCAAAGAGGTTGAGAAAGTAACAATGAAACAAGAAAACAGTTCATTTGCTGGAGGGGATTCCTTGGACGGTGCTCTCTGGGATATTTTTCGCAGAGAGGATGTACCCAAATTACAGGAATATATTAAGAAGTATTTCAGAGAGTTCAGTCATATCTATTGCAGTCCTTTAAAGCAGATTATTCACCCTATTCATGATCAAACCATTTATCTAACTATGGACCATAAGAAGAAACTTAACGAGGAGTATGGAGTTGAGCCTTGGACTTTTATTCAAAAATTAGGAGATGCCGTTTTCATTCCTGCTGGTTTGCCTCACCAAGTCAGAAATCTGAAGGTAACACACATGTCATGCATCAAGGTTGCACTTGATTTTGTCTCTCCTGAACATATTGGCGAGTGCTTCCGTTTGACAGAGGAATGTCGCAAGCTTCCGATAAATCACAAATCAGCTGAGGACAAATTTGAGGTGAAGAAAATTGTCATACATGCTATGCTTGACGTGGTTGAAAAATTGGAGAAAGCAAGAATTGGGGAAACCAAGGTTCCTGTGTAA 2703 0.4158 MAEEENDEVTFTVKITVTLTIPPPQTQQPTTVDANAETVPSNGDEVARAIILLSDDDDGSVKGDDVVVIEDSDSDREKQDMETASLNNGDDVEAAEEESVPDREKQATVSLTDDERSVEADDVAAGSSSFGKKRGRKRKKVKEAETYPLRGNAKWIDESKSTTTMCHQCQRNDKGRVVRCTKCKRKRFCIPCLTNWYPKLKESDVAEACPVCRDNCNCKACLRSFKIINQIKHTAKSKANKDEEVEFSKYLLKGLLPYLRQLDEEQMIEKKREANRQGISLSKLKIKSADYSKDERVYCDNCKTSIFDYHRTCTKCSFDLCLLCCCELRGGQLLGGADPIELEYIFRGRDYLHGGTAEKQVKGNASQAQDEPTTRDWSRSGWRANGDGSIPCPKANNECDHGFLELRRILPPNCISELVCKAKELAETFKLQDAEETLDNGCSCLKLVRNANDINNNTRKAAFREDSDDNFLFCPRAVDVHREDLRHFQWHWSKGEPVIVSNVLECSSGLSWEPLVMWRAFRQITNSKHDVFLDVKAVNCLDWCEGDINIHQFFTGYIKGRMDWLNWPQVLKLKDWPPSDLFQELLPRHHAEFISFLPYKEYTDPFKGSLNLVVKLPDYCVMPDMGPRTYIAYGFAQEFGRGDSVTKLHCDASDAVNVLTHIAKVELKPEQIAAIKKLARRHLEQDKRELNVDGKVVEIFHQHSGTNDDDLSCRPELKEVEKVTMKQENSSFAGGDSLDGALWDIFRREDVPKLQEYIKKYFREFSHIYCSPLKQIIHPIHDQTIYLTMDHKKKLNEEYGVEPWTFIQKLGDAVFIPAGLPHQVRNLKVTHMSCIKVALDFVSPEHIGECFRLTEECRKLPINHKSAEDKFEVKKIVIHAMLDVVEKLEKARIGETKVPV 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05996 900 SUPERFAMILY Clavaminate synthase-like 484 881 - -
Trre2g05996 900 MobiDBLite consensus disorder prediction 359 380 - -
Trre2g05996 900 MobiDBLite consensus disorder prediction 69 137 - -
Trre2g05996 900 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 76 891 IPR045109 GO:0032454|GO:0033169
Trre2g05996 900 SMART cupin_9 586 858 IPR003347 -
Trre2g05996 900 FunFam Transcription factor jumonji domain-containing protein 469 867 - -
Trre2g05996 900 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 161 236 IPR018866 -
Trre2g05996 900 MobiDBLite consensus disorder prediction 22 38 - -
Trre2g05996 900 MobiDBLite consensus disorder prediction 22 41 - -
Trre2g05996 900 Gene3D Cupin 471 867 - -
Trre2g05996 900 MobiDBLite consensus disorder prediction 69 84 - -
Trre2g05996 900 ProSiteProfiles Zinc finger RING-type profile. 166 213 IPR001841 -
Trre2g05996 900 MobiDBLite consensus disorder prediction 98 121 - -
Trre2g05996 900 MobiDBLite consensus disorder prediction 360 380 - -
Trre2g05996 900 ProSiteProfiles JmjC domain profile. 605 858 IPR003347 -
Trre2g05996 900 Pfam JmjC domain, hydroxylase 741 840 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05996 Trre-Chr2 65135419 65141067 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g05996 JmjC 2.6e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05996 K15601 - gmx:100780803 1048.88