Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05995 ATGATCGAAGAAACTGATGGTGAAGATGAAGTGACATCTAGAGGCATTGAATGCCAGGCACCAAAATTCAACAAGAAGAGAAATTCTAAGGGGATTGAAGAGGAGTCCACAACGTGCCATCAGTGTAAGAGAAATGATAAGGGCAGGGTTGTCAGATGCACAAATTGCAAACGGAGAAGATTTTGCATACATTGTTTAACTAAATGGTATCCTAAGTTAAAAGAGAGCGATGTTGCTGAGGCGTGTCTAGTATGCTGTGATAATTGCAATTGCATAGCATGCTTGCGATCTTCCAAACTCATCAATGAAATGAAGGGTACAGCTAAAAGTAAAACCGGCAAGGACGAGGAGGAGTACTGGAAGTATCTGCTGAAAAAACTTCTTCCATATTTAAGACAATTGGATGAAGAACAGATGCTTGAGAAGGAAAGAGAAGCCAATAAACAAGATTGTCTTATAAATGACAGCGTGTACTGTGACAATTGCAAAACGTCGATATTTGACTTCCACAGAACCTGTACAAAGTGTTCTTTCGACCTTTGCGTCCTTTGTTGCTGCGAGACTCGTGAGTGTTCAAGATTGGGGTGGAGTGCAAATGGAGATGGTAGCATTCCCTGTCCGAAAGGGAATAATGAATGCGATCACGGTTTACTAGAACTGAGAAGGCTACTACCTCCAGACGGCATCTCTAAGTTATTACGCAAAGCAGAAGAACTTGCAGAAGCATATAAGCTTCAAGAGGCAGAGGAATCTGTTGGTAATAGGTGTTCATGCTTGAAGCCAGTTAGGAACGCCGGTGATATACACAATAACACAAGGAAGGCTGCTTTTCGTGAAGATTCCAATGACAACTTTTTATATTGTCCTAGAGCTGTAGATGTACATCATGAAGGTTTAAGACATTTTCAGTGCCATTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAACGTACTCGAATGTTCATCTGGTTTAAGTTGGGAACCACTGGTCATGAGTCGTGCATTCCGTCAAAAAGCCAAATCCAAGCACGATGCAATTTTGAATGTGAAGGCAGTTAATTGTTTAGATTGGTGTGAGGGAGATATTAATACCCACCAATTCTTTAATGGGTACATAAATGGTCTCAAGGATCGGAGTGATTGGCCTCAGGTGTTGAAATTAAAAGACTGGCCTCCGTCTAATTTATTTCAGGAACTATTACCTCGTCATTATGCTGAGTTCATATCATTCTTGCCTTATAAAGAATATACTGATCCTTTAAAAGGTTCTCTGAACCTTGCTGTGAAGTTGCCGAATTCTTGTGTCACACCAGACATGGGGCCAAGAACATATATTGCTTATGGATTTGCTCAAGAGTTTGGGTGTGGTGATTCCGTGACTAAGCTACATTGTGATGCGTCTGATGTAGTAAATGTATCGACTCATATTGCTGAAGTGGAATTGAAGTCTGATAGCATTGAAGCCATTAAGAAACAAACTCAAAAGCACCTCAAGCAAGACAAAAGGGAGCTACATCTATATGGTGAAAATCAAGATGGAGAGACTAATGTTGGCGTGTTTGATAATTCATTGTCTTGCGGGGATTCTTTAGATGGTGCTCTCTGGGATATATTTCGGAGAGAGGATGTGCCAAAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGGCATGTACATTGCTCTCCTTTAGAGCAGGTTGTTCACCCTATCCACGATCAGACATTTTATTTGACTATCGAGCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTGTTCAGAGGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCACATCAAGTTCGAAATCTGAAGTCATGCACAAAGGTTGCACTTGATTTTGTGTCTCCTGAGAATGTTGGTGAGTGCCTTCGTTTGACGGAGGAATTCCGCAAACTTCCTATAAATCACAGGTCCACGGAGGACAAATTGGAGGTGAAGAAAATGATTGTATATGCTATGCTTGATCTGGTCAAAAAGTTGGAGGTAGCAAGGTCTGGAGAAACCAAGGTTCCAAAGTAA 2067 0.4141 MIEETDGEDEVTSRGIECQAPKFNKKRNSKGIEEESTTCHQCKRNDKGRVVRCTNCKRRRFCIHCLTKWYPKLKESDVAEACLVCCDNCNCIACLRSSKLINEMKGTAKSKTGKDEEEYWKYLLKKLLPYLRQLDEEQMLEKEREANKQDCLINDSVYCDNCKTSIFDFHRTCTKCSFDLCVLCCCETRECSRLGWSANGDGSIPCPKGNNECDHGLLELRRLLPPDGISKLLRKAEELAEAYKLQEAEESVGNRCSCLKPVRNAGDIHNNTRKAAFREDSNDNFLYCPRAVDVHHEGLRHFQCHWSKGEPVIVSNVLECSSGLSWEPLVMSRAFRQKAKSKHDAILNVKAVNCLDWCEGDINTHQFFNGYINGLKDRSDWPQVLKLKDWPPSNLFQELLPRHYAEFISFLPYKEYTDPLKGSLNLAVKLPNSCVTPDMGPRTYIAYGFAQEFGCGDSVTKLHCDASDVVNVSTHIAEVELKSDSIEAIKKQTQKHLKQDKRELHLYGENQDGETNVGVFDNSLSCGDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCSPLEQVVHPIHDQTFYLTIEHKKRLKEEYGIEPWTFVQRLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECLRLTEEFRKLPINHRSTEDKLEVKKMIVYAMLDLVKKLEVARSGETKVPK 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05995 688 ProSiteProfiles JmjC domain profile. 419 646 IPR003347 -
Trre2g05995 688 Pfam JmjC domain, hydroxylase 533 629 IPR003347 -
Trre2g05995 688 SMART cupin_9 400 646 IPR003347 -
Trre2g05995 688 FunFam Transcription factor jumonji domain-containing protein 283 655 - -
Trre2g05995 688 Gene3D Cupin 285 655 - -
Trre2g05995 688 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 189 679 IPR045109 GO:0032454|GO:0033169
Trre2g05995 688 SUPERFAMILY Clavaminate synthase-like 298 666 - -
Trre2g05995 688 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05995 Trre-Chr2 65123890 65128198 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g05995 JmjC 5.4e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05995 K15601 - csav:115721711 778.859