Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05994 ATGAACGATAGAAACAAAAAGAAACGCGGAAGAAAGAGTTTTGCAGAAATTCAACAAAAGATGATCGAAGAAACTGATGGTGAAGATGAAGTGACATCTAGAGGCATTGAATGCCAGGCACCAAAATTCAACAAGAAGAGAAATTCTAAGGGGATTGAAGAGGAGTCCACAACGTGCCATCAGTGTAAGAGAAATGATAAGGGCAGGGTTGTCAGATGCACAAATTGCAAACGGAGAAGATTTTGCATACATTGTTTAACTAAATGGTATCCTAAGTTAAAAGAGAGCGATGTTGCTGAGGCGTGTCTAGTATGCTGTGATAATTGCAATTGCATAGCATGCTTGCGATCTTCCAAACTCATCAATGAAATGAAGGGTACAGCTAAAAGTAAAACCGGCAAGGACGAGGAGGAGTACTGGAAGTATCTGCTGAAAAAACTTCTTCCATATTTAAGACAATTGGATGAAGAACAGATGCTTGAGAAGGAAAGAGAAGCCAATAAACAAGTGACAATTGCAAAACGTCGATATTTGACTTCCACAGAACCTGTACAAAGGAATAATGAATGCGATCACGGTTTACTAGAACTGAGAAGGCTACTACCTCCAGACGGCATCTCTAAGTTATTACGCAAAGCAGAAGAACTTGCAGAAGCATATAAGCTTCAAGAGGCAGAGGAATCTGTTGGTAATAGGTGTTCATGCTTGAAGCCAGTTAGGAACGCCGGTGATATACACAATAACACAAGGAAGGCTGCTTTTCGTGAAGATTCCAATGACAACTTTTTATATTGTCCTAGAGCTGTAGATGTACATCATGAAGGTTTAAGACATTTTCAGTGCCATTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAACGTACTCGAATGTTCATCTGGTTTAAGTTGGGAACCACTGGTCATGAGTCGTGCATTCCGTCAAAAAGCCAAATCCAAGCACGATGCAATTTTGAATGTGAAGGCAGTTAATTGTTTAGATTGGTGTGAGGGAGATATTAATACCCACCAATTCTTTAATGGGTACATAAATGGTCTCAAGGATCGGAGTGATTGGCCTCAGGTGTTGAAATTAAAAGACTGGCCTCCGTCTAATTTATTTCAGGAACTATTACCTCGTCATTATGCTGAGTTCATATCATTCTTGCCTTATAAAGAATATACTGATCCTTTAAAAGGTTCTCTGAACCTTGCTGTGAAGTTGCCGAATTCTTGTGTCACACCAGACATGGGGCCAAGAACATATATTGCTTATGGATTTGCTCAAGAGTTTGGGTGTGGTGATTCCGTGACTAAGCTACATTGTGATGCGTCTGATGTAGTAAATGTATCGACTCATATTGCTGAAGTGGAATTGAAGTCTGATAGCATTGAAGCCATTAAGAAACAAACTCAAAAGCACCTCAAGCAAGACAAAAGGGAGCTACATCTATATGGTGAAAATCAAGATGGAGAGACTAATGTTGGCGTGTTTGATAATTCATTGTCTTGCGGGGATTCTTTAGATGGTGCTCTCTGGGATATATTTCGGAGAGAGGATGTGCCAAAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGGCATGTACATTGCTCTCCTTTAGAGCAGGTTGTTCACCCTATCCACGATCAGACATTTTATTTGACTATCGAGCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTGTTCAGAGGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCACATCAAGTTCGAAATCTGAAGTCATGCACAAAGGTTGCACTTGATTTTGTGTCTCCTGAGAATGTTGGTGAGTGCCTTCGTTTGACGGAGGAATTCCGCAAACTTCCTATAAATCACAGGTCCACGGAGGACAAATTGGAGGTGAAGAAAATGATTGTATATGCTATGCTTGATCTGGTCAAAAAGTTGGAGGTAGCAAGGTCTGGAGAAACCAAGGTTCCAAAGTAA 1998 0.4079 MNDRNKKKRGRKSFAEIQQKMIEETDGEDEVTSRGIECQAPKFNKKRNSKGIEEESTTCHQCKRNDKGRVVRCTNCKRRRFCIHCLTKWYPKLKESDVAEACLVCCDNCNCIACLRSSKLINEMKGTAKSKTGKDEEEYWKYLLKKLLPYLRQLDEEQMLEKEREANKQVTIAKRRYLTSTEPVQRNNECDHGLLELRRLLPPDGISKLLRKAEELAEAYKLQEAEESVGNRCSCLKPVRNAGDIHNNTRKAAFREDSNDNFLYCPRAVDVHHEGLRHFQCHWSKGEPVIVSNVLECSSGLSWEPLVMSRAFRQKAKSKHDAILNVKAVNCLDWCEGDINTHQFFNGYINGLKDRSDWPQVLKLKDWPPSNLFQELLPRHYAEFISFLPYKEYTDPLKGSLNLAVKLPNSCVTPDMGPRTYIAYGFAQEFGCGDSVTKLHCDASDVVNVSTHIAEVELKSDSIEAIKKQTQKHLKQDKRELHLYGENQDGETNVGVFDNSLSCGDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCSPLEQVVHPIHDQTFYLTIEHKKRLKEEYGIEPWTFVQRLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECLRLTEEFRKLPINHRSTEDKLEVKKMIVYAMLDLVKKLEVARSGETKVPK 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05994 665 SMART cupin_9 377 623 IPR003347 -
Trre2g05994 665 Pfam JmjC domain, hydroxylase 510 606 IPR003347 -
Trre2g05994 665 Coils Coil 206 226 - -
Trre2g05994 665 Gene3D Cupin 262 632 - -
Trre2g05994 665 FunFam Transcription factor jumonji domain-containing protein 260 632 - -
Trre2g05994 665 ProSiteProfiles JmjC domain profile. 396 623 IPR003347 -
Trre2g05994 665 SUPERFAMILY Clavaminate synthase-like 275 643 - -
Trre2g05994 665 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 184 656 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05994 Trre-Chr2 65123830 65128198 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g05994 JmjC 5.1e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05994 K15601 - cpap:110817842 693.73