Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05993 ATGAACGATAGAAACAAAAAGAAACGCGGAAGAAAGAGTTTTGCAGAAATTCAACAAAAGATGATCGAAGAAACTGATGGTGAAGATGAAGTGACATCTAGAGGCATTGAATGCCAGGCACCAAAATTCAACAAGAAGAGAAATTCTAAGGGGATTGAAGAGGAGTCCACAACGTGCCATCAGTGTAAGAGAAATGATAAGGGCAGGGTTGTCAGATGCACAAATTGCAAACGGAGAAGATTTTGCATACATTGTTTAACTAAATGGTATCCTAAGTTAAAAGAGAGCGATGTTGCTGAGGCGTGTCTAGTATGCTGTGATAATTGCAATTGCATAGCATGCTTGCGATCTTCCAAACTCATCAATGAAATGAAGGGTACAGCTAAAAGTAAAACCGGCAAGGACGAGGAGGAGTACTGGAAGTATCTGCTGAAAAAACTTCTTCCATATTTAAGACAATTGGATGAAGAACAGATGCTTGAGAAGGAAAGAGAAGCCAATAAACAAGATTGTCTTATAAATGACAGCGTTGACAATTGCAAAACGTCGATATTTGACTTCCACAGAACCTGTACAAAGTGTTCTTTCGACCTTTGCGTCCTTTGTTGCTGCGAGACTCGTGAGTGTTCAAGATTGGGGTGGAGTGCAAATGGAGATGGTAGCATTCCCTGTCCGAAAGGGAATAATGAATGCGATCACGGTTTACTAGAACTGAGAAGGCTACTACCTCCAGACGGCATCTCTAAGTTATTACGCAAAGCAGAAGAACTTGCAGAAGCATATAAGCTTCAAGAGGCAGAGGAATCTGTTGGTAATAGGTGTTCATGCTTGAAGCCAGTTAGGAACGCCGGTGATATACACAATAACACAAGGAAGGCTGCTTTTCGTGAAGATTCCAATGACAACTTTTTATATTGTCCTAGAGCTGTAGATGTACATCATGAAGGTTTAAGACATTTTCAGTGCCATTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAACGTACTCGAATGTTCATCTGGTTTAAGTTGGGAACCACTGGTCATGAGTCGTGCATTCCGTCAAAAAGCCAAATCCAAGCACGATGCAATTTTGAATGTGAAGGCAGTTAATTGTTTAGATTGGTGTGAGGGAGATATTAATACCCACCAATTCTTTAATGGGTACATAAATGGTCTCAAGGATCGGAGTGATTGGCCTCAGGTGTTGAAATTAAAAGACTGGCCTCCGTCTAATTTATTTCAGGAACTATTACCTCGTCATTATGCTGAGTTCATATCATTCTTGCCTTATAAAGAATATACTGATCCTTTAAAAGGTTCTCTGAACCTTGCTGTGAAGTTGCCGAATTCTTGTGTCACACCAGACATGGGGCCAAGAACATATATTGCTTATGGATTTGCTCAAGAGTTTGGGTGTGGTGATTCCGTGACTAAGCTACATTGTGATGCGTCTGATGTAGTAAATGTATCGACTCATATTGCTGAAGTGGAATTGAAGTCTGATAGCATTGAAGCCATTAAGAAACAAACTCAAAAGCACCTCAAGCAAGACAAAAGGGAGCTACATCTATATGGTGAAAATCAAGATGGAGAGACTAATGTTGGCGTGTTTGATAATTCATTGTCTTGCGGGGATTCTTTAGATGGTGCTCTCTGGGATATATTTCGGAGAGAGGATGTGCCAAAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGGCATGTACATTGCTCTCCTTTAGAGCAGGTTGTTCACCCTATCCACGATCAGACATTTTATTTGACTATCGAGCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTGTTCAGAGGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCACATCAAGTTCGAAATCTGAAGTCATGCACAAAGGTTGCACTTGATTTTGTGTCTCCTGAGAATGTTGGTGAGTGCCTTCGTTTGACGGAGGAATTCCGCAAACTTCCTATAAATCACAGGTCCACGGAGGACAAATTGGAGGTGAAGAAAATGATTGTATATGCTATGCTTGATCTGGTCAAAAAGTTGGAGGTAGCAAGGTCTGGAGAAACCAAGGTTCCAAAGTAA 2121 0.4116 MNDRNKKKRGRKSFAEIQQKMIEETDGEDEVTSRGIECQAPKFNKKRNSKGIEEESTTCHQCKRNDKGRVVRCTNCKRRRFCIHCLTKWYPKLKESDVAEACLVCCDNCNCIACLRSSKLINEMKGTAKSKTGKDEEEYWKYLLKKLLPYLRQLDEEQMLEKEREANKQDCLINDSVDNCKTSIFDFHRTCTKCSFDLCVLCCCETRECSRLGWSANGDGSIPCPKGNNECDHGLLELRRLLPPDGISKLLRKAEELAEAYKLQEAEESVGNRCSCLKPVRNAGDIHNNTRKAAFREDSNDNFLYCPRAVDVHHEGLRHFQCHWSKGEPVIVSNVLECSSGLSWEPLVMSRAFRQKAKSKHDAILNVKAVNCLDWCEGDINTHQFFNGYINGLKDRSDWPQVLKLKDWPPSNLFQELLPRHYAEFISFLPYKEYTDPLKGSLNLAVKLPNSCVTPDMGPRTYIAYGFAQEFGCGDSVTKLHCDASDVVNVSTHIAEVELKSDSIEAIKKQTQKHLKQDKRELHLYGENQDGETNVGVFDNSLSCGDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCSPLEQVVHPIHDQTFYLTIEHKKRLKEEYGIEPWTFVQRLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECLRLTEEFRKLPINHRSTEDKLEVKKMIVYAMLDLVKKLEVARSGETKVPK 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05993 706 Gene3D Cupin 303 673 - -
Trre2g05993 706 SUPERFAMILY Clavaminate synthase-like 316 684 - -
Trre2g05993 706 FunFam Transcription factor jumonji domain-containing protein 301 673 - -
Trre2g05993 706 SMART cupin_9 418 664 IPR003347 -
Trre2g05993 706 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 207 697 IPR045109 GO:0032454|GO:0033169
Trre2g05993 706 Pfam JmjC domain, hydroxylase 551 647 IPR003347 -
Trre2g05993 706 Coils Coil 247 267 - -
Trre2g05993 706 ProSiteProfiles JmjC domain profile. 437 664 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05993 Trre-Chr2 65123830 65128198 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g05993 JmjC 5.6e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05993 K15601 - csav:115721711 773.852