Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05988 ATGCAATCTATTAGAAAATCATTCAAATCTTATGCTTCTTACAACAAAAAAAATTCTACTAGGTTTTCCTCTACCGGAGACCCAGATTCCGACGACCACGAACAACTCCCTATCCTCCACGACCAAGAACACCACCGTCAACCTTCTCCCATGGCCGGAGACGTCGTCGTAAAGATTGACGACGCCGGTGAACCTTCTCGAGAGAATAAGATTTGGAGAGAGTCCAGCTATGATTTTTGGAATGATACCGGCGACAATGTCCGTGATGATAGTTTTGATTTCCGTAATAAAACTCATCAGGAGGATCCACCGTCTCAGCTAATCGGAAAGTTTTTGCATAAACAGAAAGCCTCTGGTGAGATGTCGTTGGATATGGATTTGGAGATGGAGGAGCTTCAGAATGAAGGTGATAGCGATGGAAAGTTAACGCCGGTGGAGGAATCTCCTACAATGATACAACGTGAGCTTAAGGTTTCGTTTGAGGAACCAGCTTCGAATGTAATTGAATCGGTTAATGATCATGTTAGGAGAAGACACAGCAAGGATTCACCTTCCATGGCTGAGTTTTCTAGACCTCCATTTCCTCCAAATCATGACCGTCGTCGTTCTCCGTCACCCTCCCCGGCCGGAACCGATTGTGAGGTCATTAGGTGTACCTCTAATGGTTCCTTTCATCCTTCTTTTGAAAGGAATCTTTCCATGCAGAGAAAATCAACGTTATTGAAAACCAAAACTAAGTCCAGATTAATGGACCCGCCTGATGAACCGATGGTGGATAGAAGATCGGGCCGGGTTGCTAAATCGGGTCAGCTTTTGTCCGGGTTTATTGGGAAGAAAGGTGATGAGGAGGAAGATGATCCGTTTATGGAAGAGGATTTTCCAGATGAGTATAAGAAAACACAATTTAGTCTTTGGATTCTTCTTGAATGGTTGAGTTTGATTTTGATTATTGGTGCATTAGTAACAACTTTGAGTGTTCCTTTTTTAAGGGAGAAGAATTTGTGGCAACTCTTGTTATGGAAATGGGAGGTAATGATTCTTGTTCTAATATGCGGTAGATTGGTTTCTGATTGGTTTATTAGAATCGCCGTTTTTTGTATCGAAAGAAATTTTCTATTGAGAAAAAGGGTACTTTACTTTGTGTATGGTGTGAAGAAAGCTGTGCAAAATTGTGTTTGGTTGGGACTTGTTTTAATTGCATGGCATTTTCTCTTTGATGAGAGAGTTCAAAGAGAGACAAAAAGTGATTTCCTTCAATATGTCACCAAGGTTTTGGTTTGTTTCTTGGTGGGTACTTTGGTGTGGTTGTTGAAAACTCTAATGGTTAAGGTTTTAGCTTCTTCTTTTCATGTGAGTACATATTTTGATAGAATTCAAGAGTCACTGTTTAATCAATTCGTAATTGAAACACTTTCGGGGCCACCTTTGGTGGAAATTCGAAAGGCTGAAGAGGAAGAGGAAAGACTTGCTGAAGAGGTTCAAAAGTTGCAGAATGCTGGGGTTACCATTCCTGCTGATCTTAGAGATTCTGCATTTCCTACAAAGAGTGGAAGGTCAAAGAGTGGTATGCTTCCGAAAAGCCCTGTTGTTAAAAGTGCCAGGTTTTCAAGGCCACTTTCGAAGAAATCGGATGATGGAATTGGGAATGGTGGTGGGATAACTATTGATCACTTACATAAGCTGAATCCAAATAATGTGTCTGCTTGGAATATGAAAAGGTTGATGAATATGGTTCGGCACGGGGCACTTACTACATTGGATGAACAAATACTTGATTCCACTGCTGATGATGAGCACGCCACACAAATCAGAAGTGAAAATGAGGCTAAAGCAGCTGCTAAGAAAATCTTTCAGAATGTTGCTAGGCGCGGCTGCAGGTTTATATACCCTGAGGATTTGATACGTTTTATGCGAGAAGATGAAGCTATAAAAACCATAAATCTTTTTGAAGGAGCGTTAGATACTGGGAGAATCAGTAAATCCGCCTTGAAAAATTGGGTGGTGAATGCCTTCAGGGAGAGGAGAGCACTTGCTTTGACATTGAACGACACCAAAACAGCAGTGAACAAACTTCATCGAATGCTCAATTTTTTAGTTGCCATTATCATACTGGTTATTTGGCTCTTGATATTGGAAATTGCCACCACCAAATTTCTTCTTTTTGTGAGCTCACAACTTGTCTTGGTTGCATTTATATTTGGAAACACCTGCAAAACCGTATTTGAAGCAATCATATTCTTATTTGTCATGCACCCGTTTGATGTGGGAGATAGATGTGAAATTGATGCAACCCAGATGGTTGTAGAAGAAATGAACATATTGACTACCGTATTTCTTAGATTCGATAATCAAAAGATAACAATTCCTAACGCTGTTCTTGCTACTAAGGCCATACATAATTTCTACCGTAGTCCTGACATGGGAGATTCTGTTGAATTCCTTATCCATGTAGCTACCCCAGCTGAAAAGATTTCACTCATAAAACACAGAATAAATAGTTTCGTTGATAACAAGAAGGAGCATTGGTATCCTTCACCTTTTATAGTCTTGAAGGATCACGAACAATTGGACATGGTGAGAATGGCGATCTGGCCAACTCACAGAATGAACTTCCAAGACATGGGAGAAAGATTTATCAGGAGGTCTCTTCTTGTTGAAGAGTTGATGAAGATTTTCAAAGATCTTGACATTCAATACCGTCTCATGCCTCTTGACATTAACGTTAGAGCTGTGCCTACCACTTCTGAACGTCTTCCACCTAGTTGGTCAGCATTCACAAATTGA 2784 0.4052 MQSIRKSFKSYASYNKKNSTRFSSTGDPDSDDHEQLPILHDQEHHRQPSPMAGDVVVKIDDAGEPSRENKIWRESSYDFWNDTGDNVRDDSFDFRNKTHQEDPPSQLIGKFLHKQKASGEMSLDMDLEMEELQNEGDSDGKLTPVEESPTMIQRELKVSFEEPASNVIESVNDHVRRRHSKDSPSMAEFSRPPFPPNHDRRRSPSPSPAGTDCEVIRCTSNGSFHPSFERNLSMQRKSTLLKTKTKSRLMDPPDEPMVDRRSGRVAKSGQLLSGFIGKKGDEEEDDPFMEEDFPDEYKKTQFSLWILLEWLSLILIIGALVTTLSVPFLREKNLWQLLLWKWEVMILVLICGRLVSDWFIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHFLFDERVQRETKSDFLQYVTKVLVCFLVGTLVWLLKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIRKAEEEEERLAEEVQKLQNAGVTIPADLRDSAFPTKSGRSKSGMLPKSPVVKSARFSRPLSKKSDDGIGNGGGITIDHLHKLNPNNVSAWNMKRLMNMVRHGALTTLDEQILDSTADDEHATQIRSENEAKAAAKKIFQNVARRGCRFIYPEDLIRFMREDEAIKTINLFEGALDTGRISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDATQMVVEEMNILTTVFLRFDNQKITIPNAVLATKAIHNFYRSPDMGDSVEFLIHVATPAEKISLIKHRINSFVDNKKEHWYPSPFIVLKDHEQLDMVRMAIWPTHRMNFQDMGERFIRRSLLVEELMKIFKDLDIQYRLMPLDINVRAVPTTSERLPPSWSAFTN 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05988 927 PIRSF Memb_At2g17000 29 925 IPR016688 -
Trre2g05988 927 Gene3D - 752 801 IPR023408 -
Trre2g05988 927 SUPERFAMILY Sm-like ribonucleoproteins 742 801 IPR010920 -
Trre2g05988 927 MobiDBLite consensus disorder prediction 26 48 - -
Trre2g05988 927 MobiDBLite consensus disorder prediction 15 57 - -
Trre2g05988 927 MobiDBLite consensus disorder prediction 132 212 - -
Trre2g05988 927 Coils Coil 476 502 - -
Trre2g05988 927 MobiDBLite consensus disorder prediction 171 185 - -
Trre2g05988 927 FunFam Predicted mechanosensitive ion channel 752 801 - -
Trre2g05988 927 Pfam Mechanosensitive ion channel 694 897 IPR006685 GO:0016020|GO:0055085
Trre2g05988 927 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 33 922 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05988 Trre-Chr2 65068705 65073370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05988 54 924 Mechanosensitive Ion Channel Family AT1G78610 58.406 0.0 958
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05988 K22048 - gmx:100789882 1385.55