Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05962 ATGTTATCGGAGTTAGTGAATTTTCTGAAGGCCTGCTTTCGGCCGGGTACGGATGGACATGCACGAACAGCGTCGGATGCTGGAGGTAAACAGGATGGACTATTGTGGTACAAAGACTTGGGGCAGCACTTGTGTGGTGAATTTTCGATGGCTGTAGTTCAAGCTAATAACTTGCTGGAGGATCAGAGTCAGATTGAATCTGGTAGTTTGAGCTTGACCGAGTCTGGTCCTTGTGGAACCTTTGTTGGTATCTATGATGGACATGGAGGGCCTGAGACGTCACGGTTTATCAACAATCATCTATTTCAACATCTCAAGAGATTTACTTCTGAGCAACAATCAATGCCAGTGGATGTAATTCGCAAGGCAATCCAAGCAACAGAAGATGGGTTTATGTCGCTGGTTTCACAACTGTGGTCAATTTCACCGCAAATTGCAGCAGTTGGATCGTGCTGTCTTGTTGGTGTTATTTGTAATGGAACCCTTTATATAGCAAACCTTGGTGATTCTAGGGCTGTTTTGGGAAGAGTAGTCAAGGCAACTGGTGAGGTTTTAGCCATGCAATTATCAACGGAGCACAATGCATCAATAGAGTCTGTAAGACAGGAGCTTCATTCTATGCACCCTGATGATTCAAATATTGTTGTTTTGAAGCATAATGTATGGCGTGTGAAGGGAATTATACAAATTTCTAGATGTATTGGCGACGTGTATTTGAAAAAAGCCGAATTCAATAGAGAACCATTATATGCCAAGTTTCGACTTCATGAGCCTTTCAAGAGGCCAATACTGAGCTCAGAACCATCAATATTAGTGCATCAGTTGCAACCGCATGATCAATTTATTATATTCGCATCTGATGGTCTCTGGGAACACTTCAGCAATCAAGAAGCAGTTGATATAGTTCAAAAGAATCCTCGCGCTGGAATTGCAAGGAGGATGGTGAAAACTGCGCTTAAAGCAGCGGCAAAGAAGAGAGAAATGAGATATTCAGATTTAAATAAAATTGACCGTGGAGTTCGGCGGCATTTCCATGATGATATAACTGTGATAGTTGTGTATCTTGATTCAAATCTCATGAGTAGGGCAAGCACCGTGAAGTTCCCTAGTATTTCTGTTAGAGGTGGTGGTGTTACCATTCCTCAAAACACATTGGCACCTTGTACTACTACAACAAATAATGGTGGTACTTAA 1194 0.4204 MLSELVNFLKACFRPGTDGHARTASDAGGKQDGLLWYKDLGQHLCGEFSMAVVQANNLLEDQSQIESGSLSLTESGPCGTFVGIYDGHGGPETSRFINNHLFQHLKRFTSEQQSMPVDVIRKAIQATEDGFMSLVSQLWSISPQIAAVGSCCLVGVICNGTLYIANLGDSRAVLGRVVKATGEVLAMQLSTEHNASIESVRQELHSMHPDDSNIVVLKHNVWRVKGIIQISRCIGDVYLKKAEFNREPLYAKFRLHEPFKRPILSSEPSILVHQLQPHDQFIIFASDGLWEHFSNQEAVDIVQKNPRAGIARRMVKTALKAAAKKREMRYSDLNKIDRGVRRHFHDDITVIVVYLDSNLMSRASTVKFPSISVRGGGVTIPQNTLAPCTTTTNNGGT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05962 397 CDD PP2Cc 48 355 IPR001932 -
Trre2g05962 397 PANTHER PROTEIN PHOSPHATASE 33 354 IPR015655 GO:0004722|GO:0006470
Trre2g05962 397 SMART PP2C_4 41 353 IPR001932 -
Trre2g05962 397 Pfam Protein phosphatase 2C 80 324 IPR001932 -
Trre2g05962 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Trre2g05962 397 Gene3D - 37 365 IPR036457 -
Trre2g05962 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Trre2g05962 397 ProSiteProfiles PPM-type phosphatase domain profile. 44 355 IPR001932 -
Trre2g05962 397 FunFam Phosphatase 2C family protein 36 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05962 Trre-Chr2 64897622 64900047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05962 1 392 PP2C-type Phosphatase Gene Family AT4G38520 72.449 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05962 - K01102 gmx:100790374 677.937