Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05959 ATGGAATTTGATGAATATGAATACTTAGAGAAAACAGTTGATAATTCTGAACTTAAGAATGAGAATGAAACCACTAATGGTGGTGGGGATAGGACTGTTAAATCTGAAGATAGAGTCCGTAGTCGTAGCTCCAAGCGTAGGGATAGTGAGAAGGATGATGGTGATGATGGTTATCGTAGTGGTTATGATAGGCGGAAAGAAAGAGGCTCGTCTCGTAATCGTTCACGGTCTAGAGATGGAGACAAGGAGAAGGATAAGCAGAGAAGCTCTCAGGGTAATGGGGATAGGAGGAGAGATAGGGATAGAGACAGTGGAGACAAGTATAGAAGGGAGAGAGAAAGAGACAGGGACGTTGAAAGAGACAGAAGGAATCGAGGGAGTGAGAGTGAAAGAGAGAAAGAGCGTTCTCAGCGAAGCAGAAGTAGATCCGAAAGGCATCAAAGTGATATGGATAATGGTGACAGAGAGAGAAGTCGTGATAGGGAATGTAGAGACAGAGAAAGAAACCGAGATAAGGATTATAGAGACAGAGGAATGACAAGGGACGCAAAGGAACCGGATAGAGAAAACAGAAGGCATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGATTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGAGAGAGACGTTTATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAAGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCCGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCAGCTGTTGCCGGTGGACCTAATGGAAATTTAGGCCCTTATTCTGGGGGTGCAAGAAGGCTCTATGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTACGTAGGGTGTTTGAAGCTTTTGGTCAAGTTGAGCTAGTCCAGCTGCCTCTTGATGACATTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCTCAGAGTTTGAATAGCCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCGGCGGTTACTGATCAATCTGGAATGCAAGAATTCGGCGGAAATACTGGTGATATGGATGATGATGAAGGTGGTGGCATGTCCTTGAATGCCTCTTCCCGAGCGTTACTCATGCAGAAGTTGGATCGCAGTGGCAATGCATCAAGTATGATTGGTTTGCTGGGCAATTCTGCTGTCAACAGTACAGGTCTTAATCTACAAGCAACGGGAAACATACCAGCAACAGCTCTTCTAGGAGCCGCACCAGTGGGTTCACTTTCTATTCCTGTATTAGCTGGACTGCCAAGTGGAGGCCTCCAAATTCCAATGCCGACAAGTCCTTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCGAAAATGAGAAAGACCCAGACTTTGATTTGGATGTTAAAGAAGATGTTTTAGCAGAATGCTCTAAGTTTGGGAACTTAAGACATTTATGTGTTGATAAGAAGAGTGCTGGATTTGTCTACTTACGATTTGAAAATACCGAATCTGCAATAAGTGCACAGCGGGCCTTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTGCCCCAGTCATACGAAGATAGATTCCCCCTCAAATAG 1797 0.4396 MEFDEYEYLEKTVDNSELKNENETTNGGGDRTVKSEDRVRSRSSKRRDSEKDDGDDGYRSGYDRRKERGSSRNRSRSRDGDKEKDKQRSSQGNGDRRRDRDRDSGDKYRRERERDRDVERDRRNRGSESEREKERSQRSRSRSERHQSDMDNGDRERSRDRECRDRERNRDKDYRDRGMTRDAKEPDRENRRHKEKKEEAAEPEIDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTAAVAGGPNGNLGPYSGGARRLYVGNLHSSITEADLRRVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDMDDDEGGGMSLNASSRALLMQKLDRSGNASSMIGLLGNSAVNSTGLNLQATGNIPATALLGAAPVGSLSIPVLAGLPSGGLQIPMPTSPSIDTIGVPSECLLLKNMFDPENEKDPDFDLDVKEDVLAECSKFGNLRHLCVDKKSAGFVYLRFENTESAISAQRALHGRWFAGKMITASFMVPQSYEDRFPLK 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05959 598 SMART rrm1_1 213 285 IPR000504 GO:0003723
Trre2g05959 598 SMART rrm1_1 317 389 IPR000504 GO:0003723
Trre2g05959 598 SMART rrm1_1 506 584 IPR000504 GO:0003723
Trre2g05959 598 FunFam RNA-binding protein 39 isoform X1 205 297 - -
Trre2g05959 598 CDD RRM3_RBM39_like 504 586 - -
Trre2g05959 598 MobiDBLite consensus disorder prediction 1 207 - -
Trre2g05959 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 505 588 IPR000504 GO:0003723
Trre2g05959 598 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 596 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre2g05959 598 Gene3D - 311 421 IPR012677 -
Trre2g05959 598 MobiDBLite consensus disorder prediction 30 207 - -
Trre2g05959 598 Gene3D - 500 598 IPR012677 -
Trre2g05959 598 NCBIfam splicing factor, CC1-like family 95 595 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre2g05959 598 CDD RRM1_RBM39_like 213 285 - -
Trre2g05959 598 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 407 523 IPR029123 -
Trre2g05959 598 SUPERFAMILY RNA-binding domain, RBD 208 314 IPR035979 GO:0003676
Trre2g05959 598 SUPERFAMILY RNA-binding domain, RBD 316 592 IPR035979 GO:0003676
Trre2g05959 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Trre2g05959 598 MobiDBLite consensus disorder prediction 1 18 - -
Trre2g05959 598 FunFam CC1-like, splicing factor 311 419 - -
Trre2g05959 598 SMART rrm2_1 317 389 IPR003954 GO:0003676
Trre2g05959 598 SMART rrm2_1 506 584 IPR003954 GO:0003676
Trre2g05959 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 529 581 IPR000504 GO:0003723
Trre2g05959 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 387 IPR000504 GO:0003723
Trre2g05959 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 281 IPR000504 GO:0003723
Trre2g05959 598 Gene3D - 143 298 IPR012677 -
Trre2g05959 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05959 Trre-Chr2 64871866 64880402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05959 213 379 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 8.17e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05959 K13091 - gmx:100789839 719.924