Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g05959 | ATGGAATTTGATGAATATGAATACTTAGAGAAAACAGTTGATAATTCTGAACTTAAGAATGAGAATGAAACCACTAATGGTGGTGGGGATAGGACTGTTAAATCTGAAGATAGAGTCCGTAGTCGTAGCTCCAAGCGTAGGGATAGTGAGAAGGATGATGGTGATGATGGTTATCGTAGTGGTTATGATAGGCGGAAAGAAAGAGGCTCGTCTCGTAATCGTTCACGGTCTAGAGATGGAGACAAGGAGAAGGATAAGCAGAGAAGCTCTCAGGGTAATGGGGATAGGAGGAGAGATAGGGATAGAGACAGTGGAGACAAGTATAGAAGGGAGAGAGAAAGAGACAGGGACGTTGAAAGAGACAGAAGGAATCGAGGGAGTGAGAGTGAAAGAGAGAAAGAGCGTTCTCAGCGAAGCAGAAGTAGATCCGAAAGGCATCAAAGTGATATGGATAATGGTGACAGAGAGAGAAGTCGTGATAGGGAATGTAGAGACAGAGAAAGAAACCGAGATAAGGATTATAGAGACAGAGGAATGACAAGGGACGCAAAGGAACCGGATAGAGAAAACAGAAGGCATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGATTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGAGAGAGACGTTTATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAAGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCCGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCAGCTGTTGCCGGTGGACCTAATGGAAATTTAGGCCCTTATTCTGGGGGTGCAAGAAGGCTCTATGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTACGTAGGGTGTTTGAAGCTTTTGGTCAAGTTGAGCTAGTCCAGCTGCCTCTTGATGACATTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCTCAGAGTTTGAATAGCCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCGGCGGTTACTGATCAATCTGGAATGCAAGAATTCGGCGGAAATACTGGTGATATGGATGATGATGAAGGTGGTGGCATGTCCTTGAATGCCTCTTCCCGAGCGTTACTCATGCAGAAGTTGGATCGCAGTGGCAATGCATCAAGTATGATTGGTTTGCTGGGCAATTCTGCTGTCAACAGTACAGGTCTTAATCTACAAGCAACGGGAAACATACCAGCAACAGCTCTTCTAGGAGCCGCACCAGTGGGTTCACTTTCTATTCCTGTATTAGCTGGACTGCCAAGTGGAGGCCTCCAAATTCCAATGCCGACAAGTCCTTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCGAAAATGAGAAAGACCCAGACTTTGATTTGGATGTTAAAGAAGATGTTTTAGCAGAATGCTCTAAGTTTGGGAACTTAAGACATTTATGTGTTGATAAGAAGAGTGCTGGATTTGTCTACTTACGATTTGAAAATACCGAATCTGCAATAAGTGCACAGCGGGCCTTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTGCCCCAGTCATACGAAGATAGATTCCCCCTCAAATAG | 1797 | 0.4396 | MEFDEYEYLEKTVDNSELKNENETTNGGGDRTVKSEDRVRSRSSKRRDSEKDDGDDGYRSGYDRRKERGSSRNRSRSRDGDKEKDKQRSSQGNGDRRRDRDRDSGDKYRRERERDRDVERDRRNRGSESEREKERSQRSRSRSERHQSDMDNGDRERSRDRECRDRERNRDKDYRDRGMTRDAKEPDRENRRHKEKKEEAAEPEIDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTAAVAGGPNGNLGPYSGGARRLYVGNLHSSITEADLRRVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDMDDDEGGGMSLNASSRALLMQKLDRSGNASSMIGLLGNSAVNSTGLNLQATGNIPATALLGAAPVGSLSIPVLAGLPSGGLQIPMPTSPSIDTIGVPSECLLLKNMFDPENEKDPDFDLDVKEDVLAECSKFGNLRHLCVDKKSAGFVYLRFENTESAISAQRALHGRWFAGKMITASFMVPQSYEDRFPLK | 598 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g05959 | 598 | SMART | rrm1_1 | 213 | 285 | IPR000504 | GO:0003723 | |
Trre2g05959 | 598 | SMART | rrm1_1 | 317 | 389 | IPR000504 | GO:0003723 | |
Trre2g05959 | 598 | SMART | rrm1_1 | 506 | 584 | IPR000504 | GO:0003723 | |
Trre2g05959 | 598 | FunFam | RNA-binding protein 39 isoform X1 | 205 | 297 | - | - | |
Trre2g05959 | 598 | CDD | RRM3_RBM39_like | 504 | 586 | - | - | |
Trre2g05959 | 598 | MobiDBLite | consensus disorder prediction | 1 | 207 | - | - | |
Trre2g05959 | 598 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 505 | 588 | IPR000504 | GO:0003723 | |
Trre2g05959 | 598 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 596 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Trre2g05959 | 598 | Gene3D | - | 311 | 421 | IPR012677 | - | |
Trre2g05959 | 598 | MobiDBLite | consensus disorder prediction | 30 | 207 | - | - | |
Trre2g05959 | 598 | Gene3D | - | 500 | 598 | IPR012677 | - | |
Trre2g05959 | 598 | NCBIfam | splicing factor, CC1-like family | 95 | 595 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Trre2g05959 | 598 | CDD | RRM1_RBM39_like | 213 | 285 | - | - | |
Trre2g05959 | 598 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 407 | 523 | IPR029123 | - | |
Trre2g05959 | 598 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 314 | IPR035979 | GO:0003676 | |
Trre2g05959 | 598 | SUPERFAMILY | RNA-binding domain, RBD | 316 | 592 | IPR035979 | GO:0003676 | |
Trre2g05959 | 598 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 316 | 393 | IPR000504 | GO:0003723 | |
Trre2g05959 | 598 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Trre2g05959 | 598 | FunFam | CC1-like, splicing factor | 311 | 419 | - | - | |
Trre2g05959 | 598 | SMART | rrm2_1 | 317 | 389 | IPR003954 | GO:0003676 | |
Trre2g05959 | 598 | SMART | rrm2_1 | 506 | 584 | IPR003954 | GO:0003676 | |
Trre2g05959 | 598 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 529 | 581 | IPR000504 | GO:0003723 | |
Trre2g05959 | 598 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 318 | 387 | IPR000504 | GO:0003723 | |
Trre2g05959 | 598 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 222 | 281 | IPR000504 | GO:0003723 | |
Trre2g05959 | 598 | Gene3D | - | 143 | 298 | IPR012677 | - | |
Trre2g05959 | 598 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 212 | 289 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g05959 | Trre-Chr2 | 64871866 | 64880402 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g05959 | 213 | 379 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.402 | 8.17e-13 | 69.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g05959 | K13091 | - | gmx:100789839 | 719.924 |