Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05958 ATGATGGAATTTGATGAATATGAATACTTAGAGAAAACAGTTGATAATTCTGAACTTAAGAATGAGAATGAAACCACTAATGGTGGTGGGGATAGGACTGTTAAATCTGAAGATAGAGTCCGTAGTCGTAGCTCCAAGCGTAGGGATAGTGAGAAGGATGATGGTGATGATGGTTATCGTAGTGGTTATGATAGGCGGAAAGAAAGAGGCTCGTCTCGTAATCGTTCACGGTCTAGAGATGGAGACAAGGAGAAGGATAAGCAGAGAAGCTCTCAGGGTAATGGGGATAGGAGGAGAGATAGGGATAGAGACAGTGGAGACAAGTATAGAAGGGAGAGAGAAAGAGACAGGGACGTTGAAAGAGACAGAAGGAATCGAGGGAGTGAGAGTGAAAGAGAGAAAGAGCGTTCTCAGCGAAGCAGAAGTAGATCCGAAAGGCATCAAAGTGATATGGATAATGGTGACAGAGAGAGAAGTCGTGATAGGGAATGTAGAGACAGAGAAAGAAACCGAGATAAGGATTATAGAGACAGAGGAATGACAAGGGACGCAAAGGAACCGGATAGAGAAAACAGAAGGCATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGATTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGAGAGAGACGTTTATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAAGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCCGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCAGCTGTTGCCGGTGGACCTAATGGAAATTTAGGCCCTTATTCTGGGGGTGCAAGAAGGCTCTATGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTACGTAGGGTGTTTGAAGCTTTTGGTCAAGTTGAGCTAGTCCAGCTGCCTCTTGATGACATTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCTCAGAGTTTGAATAGCCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCGGCGGTTACTGATCAATCTGGAATGCAAGAATTCGGCGGAAATACTGGTGATATGGATGATGATGAAGGTGGTGGCATGTCCTTGAATGCCTCTTCCCGAGCGTTACTCATGCAGAAGTTGGATCGCAGTGGCAATGCATCAAGTATGATTGGTTTGCTGGGCAATTCTGCTGTCAACAGTACAGGTCTTAATCTACAAGCAACGGGAAACATACCAGCAACAGCTCTTCTAGGAGCCGCACCAGTGGGTTCACTTTCTATTCCTGTATTAGCTGGACTGCCAAGTGGAGGCCTCCAAATTCCAATGCCGACAAGTCCTTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCGAAAATGAGAAAGACCCAGACTTTGATTTGGATGTTAAAGAAGATGTTTTAGCAGAATGCTCTAAGTTTGGGAACTTAAGACATTTATGTGTTGATAAGAAGAGTGCTGGATTTGTCTACTTACGATTTGAAAATACCGAATCTGCAATAAGTGCACAGCGGGCCTTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTGCCCCAGTCATACGAAGATAGATTCCCCCTCAAATAG 1800 0.4394 MMEFDEYEYLEKTVDNSELKNENETTNGGGDRTVKSEDRVRSRSSKRRDSEKDDGDDGYRSGYDRRKERGSSRNRSRSRDGDKEKDKQRSSQGNGDRRRDRDRDSGDKYRRERERDRDVERDRRNRGSESEREKERSQRSRSRSERHQSDMDNGDRERSRDRECRDRERNRDKDYRDRGMTRDAKEPDRENRRHKEKKEEAAEPEIDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTAAVAGGPNGNLGPYSGGARRLYVGNLHSSITEADLRRVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDMDDDEGGGMSLNASSRALLMQKLDRSGNASSMIGLLGNSAVNSTGLNLQATGNIPATALLGAAPVGSLSIPVLAGLPSGGLQIPMPTSPSIDTIGVPSECLLLKNMFDPENEKDPDFDLDVKEDVLAECSKFGNLRHLCVDKKSAGFVYLRFENTESAISAQRALHGRWFAGKMITASFMVPQSYEDRFPLK 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05958 599 MobiDBLite consensus disorder prediction 1 207 - -
Trre2g05958 599 CDD RRM1_RBM39_like 214 286 - -
Trre2g05958 599 Gene3D - 312 421 IPR012677 -
Trre2g05958 599 SMART rrm1_1 318 390 IPR000504 GO:0003723
Trre2g05958 599 SMART rrm1_1 214 286 IPR000504 GO:0003723
Trre2g05958 599 SMART rrm1_1 507 585 IPR000504 GO:0003723
Trre2g05958 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 506 589 IPR000504 GO:0003723
Trre2g05958 599 FunFam CC1-like, splicing factor 312 420 - -
Trre2g05958 599 Gene3D - 501 599 IPR012677 -
Trre2g05958 599 MobiDBLite consensus disorder prediction 1 19 - -
Trre2g05958 599 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 408 524 IPR029123 -
Trre2g05958 599 SUPERFAMILY RNA-binding domain, RBD 317 593 IPR035979 GO:0003676
Trre2g05958 599 SUPERFAMILY RNA-binding domain, RBD 209 315 IPR035979 GO:0003676
Trre2g05958 599 SMART rrm2_1 318 390 IPR003954 GO:0003676
Trre2g05958 599 SMART rrm2_1 507 585 IPR003954 GO:0003676
Trre2g05958 599 NCBIfam splicing factor, CC1-like family 96 596 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre2g05958 599 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 597 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre2g05958 599 MobiDBLite consensus disorder prediction 31 207 - -
Trre2g05958 599 Gene3D - 144 299 IPR012677 -
Trre2g05958 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 290 IPR000504 GO:0003723
Trre2g05958 599 FunFam RNA-binding protein 39 isoform X1 206 298 - -
Trre2g05958 599 CDD RRM3_RBM39_like 505 587 - -
Trre2g05958 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Trre2g05958 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 530 582 IPR000504 GO:0003723
Trre2g05958 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 388 IPR000504 GO:0003723
Trre2g05958 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 282 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05958 Trre-Chr2 64871866 64880405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05958 214 380 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 7.99e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05958 K13091 - gmx:100789839 719.924