Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05947 ATGAATAATTTCATCATGCAAAACTTTACCGAGAGATTAAGACCTCTTGTTGGTTTAAATGGTTGGGATTACATTGTCTATTGGAAATTAACTGATGATCAAAGGTTTCTTGAATGGTTAGGATGTTGTTGCAGTGGAAGTGAAAGTAATCAAAATGTTGGAGAAGAACATCTTTTCCCTGTCTCTTCATGTAGGGATACAATGTTTTCACATCCAAGAACAAATTCTTGTGATCTTCTTTCACAACTTTCCACTTCCATACCTACAGATTCAGGGATTCATGCACAAACTTTATTAACAAACCAACCCAATTGGTTGAACTATCCTAATACCTTGGATCCAAACACTTTACAAGAAACAATTAATGGGACCCATGTTTTGATTCCAGTACCTGGTGGACTAGTTGAGCTCTTTGTAACTAAACAAGTTGGTGAAGATCAACAGATAATAGATTTGGTCACATCTCAATGCATTGCAATGGTGGATCAAGAAGGAATGAACCACTCATTTGGATTCAATTCAATGAGTAACATGCAATCGAATCAAGTTCTAGGTGGTGATGAAAATGATGGAAATAAAACAAACAATCATTTTCATTCATCAGAGACATTGAATCTTCCACATGATATTTCTGTAATGAACTTCATGCAACAGTTCAATTATAGTTATAATCAGCAACAAAACAGAATAAAAAACGACGAAACTTTCTCAGAAGAATACCATGGTTCATTCCTTCATGATCTTGAAAACAATAACATTCTCAAATCAAACACTGAAGAGGAAAATGATAACAAAAGTTTGATGACAGATAATAATCAATATATGTTTGTTGATCCATTAGACTCAAAAAAGAAACAAGAAAATGGTGTTGGTAGATCAGATTCTATGTCAGATTGTAGTGATCAGAATGAAGAAGAGGATGATGGAAAATATAGGAGAAGGAGTGGAAAAGGAAACCAATCAAAGAACCTTGTTGCAGAGAGAAAAAGAAGGAAGAAACTAAATGATAGATTATATAATCTTCGTTCTTTGGTTCCGAGAATCTCGAAGCTTGATAGAGCTTCAATTCTTGGTGATGCTATTGAGTTTGTGAAGGATTTGCAGAAACAAGTGAAAGAACTTCAAGATGAACTTGAGGAAAATTCAGACACAGGAACTGAAAGTAACTGCATTGTTAATGGAAATAATAATAATCAATATGTTGGTGGTGTTCAAGTTCAACCAGATAATAATAATAATAATGTTGCAAAAGCAGAACATGGATTTCATGTTGGAAATGGCTATGTTTCAAAACAAAAGCAGGAAGATGTTGGTACTGTTACTGACAAGCAGACACAGCAGATGGAGCCACAAGTGGAAGTAGCTCAGATAGATGGAAATGAGTACTTTCTGAAGGTGTTCTGTGAGCATAGGCCTGGTGGTTTTGTGAAATTGATGGAAGCTTTGAACACTCTAGGCATGGATGTAGTACATGCCACAGTAACCAGTCACAAGGGTCTTGTCTCAAATGTTTTCAAAGTGGAGAAAAAGGAGAGTGAAATAGTTGAGGCTGAAGATGTAAGAGATTCCTTACTAGAGCTGACAAGGAACAGATCTACATCATGTTGGAGTCATGAGATGGCAACATCAACATCATCAGAGAATGGTGTCATCAGTAATGATCACCAGATTAATGCTGCTGCTGCTGCTGCTGCTGCCTATCATCCACATCAATTTCATAATTAA 1725 0.3588 MNNFIMQNFTERLRPLVGLNGWDYIVYWKLTDDQRFLEWLGCCCSGSESNQNVGEEHLFPVSSCRDTMFSHPRTNSCDLLSQLSTSIPTDSGIHAQTLLTNQPNWLNYPNTLDPNTLQETINGTHVLIPVPGGLVELFVTKQVGEDQQIIDLVTSQCIAMVDQEGMNHSFGFNSMSNMQSNQVLGGDENDGNKTNNHFHSSETLNLPHDISVMNFMQQFNYSYNQQQNRIKNDETFSEEYHGSFLHDLENNNILKSNTEEENDNKSLMTDNNQYMFVDPLDSKKKQENGVGRSDSMSDCSDQNEEEDDGKYRRRSGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCIVNGNNNNQYVGGVQVQPDNNNNNVAKAEHGFHVGNGYVSKQKQEDVGTVTDKQTQQMEPQVEVAQIDGNEYFLKVFCEHRPGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKESEIVEAEDVRDSLLELTRNRSTSCWSHEMATSTSSENGVISNDHQINAAAAAAAAYHPHQFHN 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05947 574 Coils Coil 507 527 - -
Trre2g05947 574 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 318 367 IPR011598 GO:0046983
Trre2g05947 574 SMART finulus 324 373 IPR011598 GO:0046983
Trre2g05947 574 MobiDBLite consensus disorder prediction 281 329 - -
Trre2g05947 574 Coils Coil 357 384 - -
Trre2g05947 574 Pfam Helix-loop-helix DNA-binding domain 325 368 IPR011598 GO:0046983
Trre2g05947 574 SUPERFAMILY ACT-like 460 529 IPR045865 -
Trre2g05947 574 Gene3D - 307 383 IPR036638 GO:0046983
Trre2g05947 574 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 155 IPR025610 -
Trre2g05947 574 CDD ACT_UUR-ACR-like 464 527 - -
Trre2g05947 574 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 381 IPR036638 GO:0046983
Trre2g05947 574 CDD bHLH_AtAMS_like 321 391 - -
Trre2g05947 574 ProSiteProfiles ACT domain profile. 463 534 IPR002912 -
Trre2g05947 574 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 193 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05947 Trre-Chr2 64814775 64817726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05947 6 544 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.473 2.02e-145 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g05947 bHLH-MYC_N 1.9e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05947 - - psat:127097943 962.214