Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05935 ATGAGTAGTAGTTGTGGTAGAGAAGGTGGAGGAGTAAGACAATACATAAGATCAAAAGTTCCTCGTCTCAGATGGACTCCTGAACTTCACCGTTGCTTTGTTAATGCCATTCAAACTCTTGGTGGTCATCATAAGGCTACCCCTAAACTTGTTCTTCAGTTAATGGATGTCAAAGGTCTCACTATTTCACATGTCAAGAGCCATCTTCAGATGTACAGAAGCATGAGAGGTGAATTAGGAAAACAAGGTAGGCCAAATTGCCAACATAGAAACCAAGGTTTTGAAGAGCATGATGATGGATGTGTTGATGAAGTGAATGATGTTGGTGTTGAGGAGCATTCTTTGAGGAGAGAATCAGATTCTTCTAACTTCTCAAAAAGAGCTAGAATAGAGAGGGGAAGTTGTTCTACAACAACTAATATGCAATGCAGCCAAAGGAGAATATGTGATGATGCTGTAAAAAATCCTCCGTACTGCTTTTATGACTATGTACTACAGCCTAATAATACCAATACCAATACTAATACTATGGGTGGTAGTAGTGAGATGCATGATGAGCATCATAACAAGAATAAAGGAGTAAAGAAGGATGAACAAGAGTTTTGTGGATGGCAGAGGAGGCAGATACAACAACCACCCAAATCTTCAGATTTTGGCATAAACCTCACTTCTTTCAAATCTCTAAACCAACAATCTGATTTCCCTCAGGATACTAATAATGTAAAAGACAGAAACACCCCTTCATGGGCAATTAATGGACTTACCAAAACTGACAGGGCACATGTAGAAGTTGAAGGTGAAGGAGGACATGAGTTGTCATTGTCTTTAACATTGCAAAATCCTTCACCTCAGACAAGTAATGTTTCTTATTCGGCCAGTGAAATCAGTGAGGCAATTTCATGCTGTCCTCCTCTTCCTAATCCTCCTGCTCTTGGTGGGTTTAGCAGCTATTACAAGGACTGCTCTAGAACATCTTCTACTGTTAAAGAAAGGATTAACTTAGACCTATCTTTAGCCATTTATGGCAATTGA 1032 0.3944 MSSSCGREGGGVRQYIRSKVPRLRWTPELHRCFVNAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGELGKQGRPNCQHRNQGFEEHDDGCVDEVNDVGVEEHSLRRESDSSNFSKRARIERGSCSTTTNMQCSQRRICDDAVKNPPYCFYDYVLQPNNTNTNTNTMGGSSEMHDEHHNKNKGVKKDEQEFCGWQRRQIQQPPKSSDFGINLTSFKSLNQQSDFPQDTNNVKDRNTPSWAINGLTKTDRAHVEVEGEGGHELSLSLTLQNPSPQTSNVSYSASEISEAISCCPPLPNPPALGGFSSYYKDCSRTSSTVKERINLDLSLAIYGN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05935 343 SUPERFAMILY Homeodomain-like 19 74 IPR009057 -
Trre2g05935 343 FunFam Myb family transcription factor 19 77 - -
Trre2g05935 343 Pfam Myb-like DNA-binding domain 23 73 IPR001005 -
Trre2g05935 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Trre2g05935 343 MobiDBLite consensus disorder prediction 172 196 - -
Trre2g05935 343 Gene3D - 20 76 - -
Trre2g05935 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 143 IPR046955 GO:0003700
Trre2g05935 343 MobiDBLite consensus disorder prediction 181 196 - -
Trre2g05935 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 21 74 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05935 Trre-Chr2 64737383 64740892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05935 5 79 G2-like Transcription Factor Family AT1G14600 72.152 1.69e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre2g05935 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05935 - - tpra:123923253 559.681