Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05925 ATGGAGCTTTCTGCATTCCCTACTTTCAAACCGCTTTCCAATTCCCTTCCTTATCAATTTCCCTGTCGATGCTCTCTTTCTCTTCGTCACTGCGACTATGCCTTTCGTCGGAATCGCAATTCAAAACCGTTTCTACAGATCAGAATGTGCACGGAGAAAGTTCCGTCCAACGGTTACGGCGGAATTGATGTTGGAGAAACTAAATCCGATTTCGTCGAAGTCATTGCCATTGGCGGTAGAAAGGATGCGGTTCTTGATTTCTGCTTAAACTCGCCGTTTCAGTTGTCTTCTCTGCGATTTTGGAATGTCATTGTGAAAGATTCACAAGAGGTGCAATTACAGCAAAGGTCTACTAAAGAAGAACCTTACCCAGGAATTGTCGAACCTCCAGTATTTATGAAGTCATGCTCAAAGACCATTGTCCTTGTGGCTAGTGCAGGATATGGACCAGACCACACTGTCGTTGTTGATATTTTTGAAACTGTAAGGTCCACAAATGGACTCACAGTTGCTGTGGTTTTGAAGCCTTTTAGCTTTGAAGGGATAAGACGAATTGATGAGATAAAAGCTTTGATGGGGAAGCTTAAGGAGAATACTAATTTACTTATCGAAATTGATATTGATGCACTTCTCAAAAAAGACTTGTTGACTCTAGATGAGGCTATGAAGACTGCAAATGATGCTGTTTTGCTAGCTATTAAGGCCATATCTGTTCTAAAATCCGAAATGCACAAAAAATTTATAGATACATTGAACAGTAGCATGAAAGAAACATGCAATTCAGAAATTATTAAAATATTGGAATGCTATAAAGAAGCCAGAATTGGATTTGGGGCTGCTTATAATATCAAAACTTCAATATTGCAGTCTATATTTGATTGTCCTTTCCTGGGTGTTTCTTTGAAGGATCCAAATAGTGTAGTTATATGCATTGTTGCGTGCTCTGAACCCATCAATGATAGCGATGTAGCAGTATTTTTGCGTACTTTCCGTGAAACAACTGAATACACGAGGGATATTATAATATCAACAGTAATTGAGCCTGATGTAGAGCCCAACCTACTGATCACGACTGTCCTTACACTTGGCAGCTTAACCGCGCAACAACCTTCCCAGAATGGTGGTATACTATCCAAACTTGCCCTGCATTTTCCTCGTGTTTTTAGTTTTTGGGGAAGACAAAGTCAGCAACAAATTGTCTCTGGGAAAGAGGATGCAGTATCTTCTCATGAAATGATAAGATCTTATGACAGTGATGAGGGGGAAAATAGGATTACTCCCAGTATTGTTGATCAAAGATTTGACAAGGACTATACACAATTGGAGCCAGACGTGAGCAACAACAGCTCAAAGTTGTCTGCTTCAAGGGATTCTGAAATAAATGAAGATTTATTTGACACCATAGCCAATTGTCCTATCCCTTATGAATCCATTAATGAAGAAGGCGACTCTGCTTTTCAGAGGGAGCAGCTTGGAAAATGGAATCTGGGCCCTGGATTTGAAGTGGCAAAAGAGTGGGCCCAAGAAAGGGAAGCTGATGCTACACCAATGGTTGATAACCTAAGCATATTCCATCTTCCTGTTGGTGTGAGGCCTTCAGAAGAGTTGAAAGACTGTCACGGTGTTCTGTCTGTTCGTGCTGCATCTATGCTGGAGGCAGAACGTGATTTGTCAACAAAGTGGAGTCCTGTTGTGGAAATACAATATAGGGGAGGAAGATACAAGGGGCGGTGCCAAGGTGGTCTGCCTGAAGGGAAGGGGCGTCTTGTTCTTCAAGATGGAAATATCTATGACGGATTATGGCACAGTGGCAAGAAATCAGGTCCAGGAACATTCTATTTCAAGAACGGAGATATGTTTCAAGGATCGTGGAGGGATGATGTCATGCACGGCAAGGGTTGGTTTTATTTTCACACTGGTGATCGGTGGTTTGCAAACTTCTGGAAGGGAAAGGCAAATGGAGAGGGGCGGTTTTACACAAAATCTGGTGATGCCTTTTTTGGCAATTTCAAAGACGGATGGCGGCATGGGCAGTTTTTTTGTGTGAATGCAAATGGAACGAGGTACACTGAAACTTGGGAACACGGTGTTCTTTTAGACAGCAAGTGTTTAGAATCGATAGATGACTGA 2130 0.4183 MELSAFPTFKPLSNSLPYQFPCRCSLSLRHCDYAFRRNRNSKPFLQIRMCTEKVPSNGYGGIDVGETKSDFVEVIAIGGRKDAVLDFCLNSPFQLSSLRFWNVIVKDSQEVQLQQRSTKEEPYPGIVEPPVFMKSCSKTIVLVASAGYGPDHTVVVDIFETVRSTNGLTVAVVLKPFSFEGIRRIDEIKALMGKLKENTNLLIEIDIDALLKKDLLTLDEAMKTANDAVLLAIKAISVLKSEMHKKFIDTLNSSMKETCNSEIIKILECYKEARIGFGAAYNIKTSILQSIFDCPFLGVSLKDPNSVVICIVACSEPINDSDVAVFLRTFRETTEYTRDIIISTVIEPDVEPNLLITTVLTLGSLTAQQPSQNGGILSKLALHFPRVFSFWGRQSQQQIVSGKEDAVSSHEMIRSYDSDEGENRITPSIVDQRFDKDYTQLEPDVSNNSSKLSASRDSEINEDLFDTIANCPIPYESINEEGDSAFQREQLGKWNLGPGFEVAKEWAQEREADATPMVDNLSIFHLPVGVRPSEELKDCHGVLSVRAASMLEAERDLSTKWSPVVEIQYRGGRYKGRCQGGLPEGKGRLVLQDGNIYDGLWHSGKKSGPGTFYFKNGDMFQGSWRDDVMHGKGWFYFHTGDRWFANFWKGKANGEGRFYTKSGDAFFGNFKDGWRHGQFFCVNANGTRYTETWEHGVLLDSKCLESIDD 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05925 709 SUPERFAMILY Tubulin nucleotide-binding domain-like 74 238 IPR036525 -
Trre2g05925 709 Pfam MORN repeat 579 595 IPR003409 -
Trre2g05925 709 Pfam MORN repeat 667 678 IPR003409 -
Trre2g05925 709 Pfam MORN repeat 597 619 IPR003409 -
Trre2g05925 709 Pfam MORN repeat 620 642 IPR003409 -
Trre2g05925 709 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 571 697 - -
Trre2g05925 709 Gene3D - 572 630 - -
Trre2g05925 709 Gene3D Tubulin/FtsZ, GTPase domain 117 362 IPR036525 -
Trre2g05925 709 Gene3D - 645 705 - -
Trre2g05925 709 PANTHER RADIAL SPOKE HEAD 1 HOMOLOG 96 696 - -
Trre2g05925 709 SMART morn 664 685 IPR003409 -
Trre2g05925 709 SMART morn 595 616 IPR003409 -
Trre2g05925 709 SMART morn 572 593 IPR003409 -
Trre2g05925 709 SMART morn 618 639 IPR003409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05925 Trre-Chr2 64685796 64692957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05925 64 708 PP2C-type Phosphatase Gene Family AT1G75010 46.676 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05925 - - gsj:114371951 952.97