Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05924 ATGGAGCTTTCTGCATTCCCTACTTTCAAACCGCTTTCCAATTCCCTTCCTTATCAATTTCCCTGTCGATGCTCTCTTTCTCTTCGTCACTGCGACTATGCCTTTCGTCGGAATCGCAATTCAAAACCGTTTCTACAGATCAGAATGTGCACGGAGAAAGTTCCGTCCAACGGTTACGGCGGAATTGATGTTGGAGAAACTAAATCCGATTTCGTCGAAGTCATTGCCATTGGCGGTAGAAAGGATGCGGTTCTTGATTTCTGCTTAAACTCGCCGTTTCAGTTGTCTTCTCTGCGATTTTGGAATGTCATTGTGAAAGATTCACAAGAGGTGCAATTACAGCAAAGGTCTACTAAAGAAGAACCTTACCCAGGAATTGTCGAACCTCCAGTATTTATGAAGTCATGCTCAAAGACCATTGTCCTTGTGGCTAGTGCAGGATATGGACCAGACCACACTGTCGTTGTTGATATTTTTGAAACTGTAAGGTCCACAAATGGACTCACAGTTGCTGTGGTTTTGAAGCCTTTTAGCTTTGAAGGGATAAGACGAATTGATGAGATAAAAGCTTTGATGGGGAAGCTTAAGGAGAATACTAATTTACTTATCGAAATTGATATTGATGCACTTCTCAAAAAAGACTTGTTGACTCTAGATGAGGCTATGAAGACTGCAAATGATGCTGTTTTGCTAGCTATTAAGGCCATATCTGTTCTAAAATCCGAAATGCACAAAAAATTTATAGATACATTGAACAGTAGCATGAAAGAAACATGCAATTCAGAAATTATTAAAATATTGGAATGCTATAAAGAAGCCAGAATTGGATTTGGGGCTGCTTATAATATCAAAACTTCAATATTGCAGTCTATATTTGATTGTCCTTTCCTGGGTGTTTCTTTGAAGGATCCAAATAGTGTAGTTATATGCATTGTTGCGTGCTCTGAACCCATCAATGATAGCGATGTAGCAGTATTTTTGCGTACTTTCCGTGAAACAACTGAATACACGAGGGATATTATAATATCAACAGTAATTGAGCCTGATGTAGAGCCCAACCTACTGATCACGACTGTCCTTACACTTGGCAGCTTAACCGCGCAACAACCTTCCCAGAATGGTGGTATACTATCCAAACTTGCCCTGCATTTTCCTCGTGTTTTTAGTTTTTGGGGAAGACAAAGTCAGCAACAAATTGTCTCTGGGAAAGAGGATGCAGTATCTTCTCATGAAATGATAAGATCTTATGACAGTGATGAGGGGGAAAATAGGATTACTCCCAGTATTGTTGATCAAAGATTTGACAAGGACTATACACAATTGGAGCCAGACGTGAGCAACAACAGCTCAAAGTTGTCTGCTTCAAGGGATTCTGAAATAAATGAAGATTTATTTGACACCATAGCCAATTGTCCTATCCCTTATGAATCCATTAATGAAGAAGGCGACTCTGCTTTTCAGAGGGAGCAGCTTGGAAAATGGAATCTGGGCCCTGGATTTGAAGTGGCAAAAGAGTGGGCCCAAGAAAGGGAAGCTGATGCTACACCAATGGTTGATAACCTAAGCATATTCCATCTTCCTGTTGGTGTGAGGCCTTCAGAAGAGTTGAAAGACTGTGTAGAAATCACATTTAGGTCAAAAAAGCATGAGCCGGATGCAGGTAAGCACGGTGTTCTGTCTGTTCGTGCTGCATCTATGCTGGAGGCAGAACGTGATTTGTCAACAAAGTGGAGTCCTGTTGTGGAAATACAATATAGGGGAGGAAGATACAAGGGGCGGTGCCAAGGTGGTCTGCCTGAAGGGAAGGGGCGTCTTGTTCTTCAAGATGGAAATATCTATGACGGATTATGGCACAGTGGCAAGAAATCAGGTCCAGGAACATTCTATTTCAAGAACGGAGATATGTTTCAAGGATCGTGGAGGGATGATGTCATGCACGGCAAGGGTTGGTTTTATTTTCACACTGGTGATCGGTGGTTTGCAAACTTCTGGAAGGGAAAGGCAAATGGAGAGGGGCGGTTTTACACAAAATCTGGTGATGCCTTTTTTGGCAATTTCAAAGACGGATGGCGGCATGGGCAGTTTTTTTGTGTGAATGCAAATGGAACGAGGTACACTGAAACTTGGGAACACGGTGTTCTTTTAGACAGCAAGTGTTTAGAATCGATAGATGACTGA 2178 0.4183 MELSAFPTFKPLSNSLPYQFPCRCSLSLRHCDYAFRRNRNSKPFLQIRMCTEKVPSNGYGGIDVGETKSDFVEVIAIGGRKDAVLDFCLNSPFQLSSLRFWNVIVKDSQEVQLQQRSTKEEPYPGIVEPPVFMKSCSKTIVLVASAGYGPDHTVVVDIFETVRSTNGLTVAVVLKPFSFEGIRRIDEIKALMGKLKENTNLLIEIDIDALLKKDLLTLDEAMKTANDAVLLAIKAISVLKSEMHKKFIDTLNSSMKETCNSEIIKILECYKEARIGFGAAYNIKTSILQSIFDCPFLGVSLKDPNSVVICIVACSEPINDSDVAVFLRTFRETTEYTRDIIISTVIEPDVEPNLLITTVLTLGSLTAQQPSQNGGILSKLALHFPRVFSFWGRQSQQQIVSGKEDAVSSHEMIRSYDSDEGENRITPSIVDQRFDKDYTQLEPDVSNNSSKLSASRDSEINEDLFDTIANCPIPYESINEEGDSAFQREQLGKWNLGPGFEVAKEWAQEREADATPMVDNLSIFHLPVGVRPSEELKDCVEITFRSKKHEPDAGKHGVLSVRAASMLEAERDLSTKWSPVVEIQYRGGRYKGRCQGGLPEGKGRLVLQDGNIYDGLWHSGKKSGPGTFYFKNGDMFQGSWRDDVMHGKGWFYFHTGDRWFANFWKGKANGEGRFYTKSGDAFFGNFKDGWRHGQFFCVNANGTRYTETWEHGVLLDSKCLESIDD 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05924 725 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 587 713 - -
Trre2g05924 725 Gene3D - 661 722 - -
Trre2g05924 725 Gene3D Tubulin/FtsZ, GTPase domain 117 362 IPR036525 -
Trre2g05924 725 SUPERFAMILY Tubulin nucleotide-binding domain-like 74 238 IPR036525 -
Trre2g05924 725 PANTHER RADIAL SPOKE HEAD 1 HOMOLOG 96 712 - -
Trre2g05924 725 Pfam MORN repeat 683 694 IPR003409 -
Trre2g05924 725 Pfam MORN repeat 613 635 IPR003409 -
Trre2g05924 725 Pfam MORN repeat 636 658 IPR003409 -
Trre2g05924 725 Pfam MORN repeat 595 611 IPR003409 -
Trre2g05924 725 Gene3D - 588 646 - -
Trre2g05924 725 SMART morn 634 655 IPR003409 -
Trre2g05924 725 SMART morn 588 609 IPR003409 -
Trre2g05924 725 SMART morn 680 701 IPR003409 -
Trre2g05924 725 SMART morn 611 632 IPR003409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05924 Trre-Chr2 64685796 64692957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05924 64 724 PP2C-type Phosphatase Gene Family AT1G75010 47.186 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05924 - - gsj:114371951 1037.71