Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05923 ATGGCTGTATCATCTTCCTCAGCATCACTGTTTGGTTTCAGAGACGAAGATCCGAATCCGATGAAGCAACAACATTCCTTGCCACCATCTTCATCTGCAACTCCAGCTGCTGCTGCTGCTGCACCATCCCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATTTGTGAGGTATGCAACAAAGGATTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAATTTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAACCTAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCAAGAGCACTTGGTGACCTCACTGGTATTAAGAAACACTTCTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGCTCCAAGAAATATGCTGTTCAATCTGACTGGAAAGCTCATTCCAAGACTTGTGGCACTAGGGAATACAGATGTGACTGTGGCACTCTCTTCTCCAGGAGGGACAGTTTCATCACTCACAGAGCTTTCTGTGATGCATTGGCTCAAGAGGGTCCTAGACAGCCACCAATTACCCTACCTGGTGCCATTGGTTCTCATCTCTATGGAAGCACCAGCAACACCATGGGTCTTAACTTATCACATGTTGCACCACAAATGTCCAACATGCACCAGCAACAAGACCACCACAGTAACTCAGCTACCGATATCCTGCGCCTCGGTGCCTCTGCTAATCGAACCGGACAATTCGACCACCACAATATCCTTCCAACAACTTTCAGACCTAATAACTCTTTCTTCAACAGCAACAACATTCATGATCCAAACCAAAACTATGTCCCTGACCAAGGTTTAATGATGCAGCAGAATAACAGCAACAATAATAACAATCTCTTCAACATACCGAATTTCCTTTCGAGTAATAACAGTGCTACTACAAACACTAACAGTAGCAACAACTCATTCTCTGAGCATTTGAATGTGAACAATAATGAAGGAACAAATTTTTTCACTGGTTCTGGTGGGACAAGTAGTGCTCCATCATCACTTTTCAGCACTTTCCCTCAAGGAGGTGGAAATAGTAACATTAATGCTGCTGCTGCTACTTCTATTGCTTCAATGTCAGCAACTGCACTTCTTCAAAAAGCTGCTCAAATGGGTGCAACTTCAAGCAATGGAAATGGAACTACCGCGACTTCGCTTCTGAAAAGCTTTGGAAACAATGCTGGTAGTAATTCAGCTTCTTCTGGTGGTGGTGGTGGTGAACATAACAGACAAATGATGAGTGGTGGTGGTGGTGGAAGTGGGAACTATGGTTTTGGTGGTGGGAATGAACAGAGTAATTTGCATGATTTGATGAATTCTTTTGCTGCTACTGGGAATAGTTCGATATTTGAAACTGGTGGAGGGGGTGTAGGGCTTGGAAGTGGAGGTGGAGATAGCAGGCAGATGACTCGTGACTTTTTAGGAGTTGGTCAGATTGTGAGAAGCATGAGTGGTGCTGTTGGAGGACAAAGAGAACATGCAGCTGCTTTTAACTTACCAGGTTCTTTGGAAGGAGATCAAAGAAACAACATTAATGCTGCAGCATCATTTGGAAGAGGTGGAGGTGGTGGTGGAGCTGGAGGAAATTTTCAGTGA 1701 0.4421 MAVSSSSASLFGFRDEDPNPMKQQHSLPPSSSATPAAAAAAPSQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPITLPGAIGSHLYGSTSNTMGLNLSHVAPQMSNMHQQQDHHSNSATDILRLGASANRTGQFDHHNILPTTFRPNNSFFNSNNIHDPNQNYVPDQGLMMQQNNSNNNNNLFNIPNFLSSNNSATTNTNSSNNSFSEHLNVNNNEGTNFFTGSGGTSSAPSSLFSTFPQGGGNSNINAAAATSIASMSATALLQKAAQMGATSSNGNGTTATSLLKSFGNNAGSNSASSGGGGGEHNRQMMSGGGGGSGNYGFGGGNEQSNLHDLMNSFAATGNSSIFETGGGGVGLGSGGGDSRQMTRDFLGVGQIVRSMSGAVGGQREHAAAFNLPGSLEGDQRNNINAAASFGRGGGGGGAGGNFQ 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05923 566 MobiDBLite consensus disorder prediction 23 38 - -
Trre2g05923 566 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 520 IPR031140 -
Trre2g05923 566 MobiDBLite consensus disorder prediction 429 463 - -
Trre2g05923 566 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Trre2g05923 566 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
Trre2g05923 566 Gene3D Classic Zinc Finger 128 204 - -
Trre2g05923 566 MobiDBLite consensus disorder prediction 1 58 - -
Trre2g05923 566 SMART c2h2final6 74 96 IPR013087 -
Trre2g05923 566 SMART c2h2final6 150 170 IPR013087 -
Trre2g05923 566 SMART c2h2final6 115 145 IPR013087 -
Trre2g05923 566 FunFam protein indeterminate-domain 12-like 53 121 - -
Trre2g05923 566 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Trre2g05923 566 Gene3D Classic Zinc Finger 53 122 - -
Trre2g05923 566 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Trre2g05923 566 Pfam Zinc-finger double-stranded RNA-binding 74 96 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05923 Trre-Chr2 64666141 64671349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05923 44 523 IDZ Gene Family AT2G02070 49.346 1.03e-134 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g05923 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05923 K25870 - gmx:100786121 540.806