Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05891 ATGGATACTTCAAATCCTGCTGCATTTGTCAATGCCCAGGCTCTTCCCAATTTCATTGGAAAGAAAGTAAGAACAGTGGTTCAGGTGAGTCATTCTGATGGCGCGACAATCACAGGAAAATCCACTGATGACTCTCAGATAACTGTAAAAGGGTTATCATCACAAGTTCCGGTGATGAATTATGTTGAAGTTATTGGCATTGCTGAAAGTAACAACTCTATCCGTGCTGAAATTTTTACAGACTTTGGTGCCACATTTGATGTCAACTCTTACAATCAGTTATGCCAACTAGCAAATGGCAATTCAAAAGTCTGTTTCTTTAGGGATCTTGAAGATTGA 339 0.3923 MDTSNPAAFVNAQALPNFIGKKVRTVVQVSHSDGATITGKSTDDSQITVKGLSSQVPVMNYVEVIGIAESNNSIRAEIFTDFGATFDVNSYNQLCQLANGNSKVCFFRDLED 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05891 112 CDD RPA3 6 104 - -
Trre2g05891 112 Gene3D - 2 108 IPR012340 -
Trre2g05891 112 Pfam Replication factor A protein 3 1 100 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre2g05891 112 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 106 - -
Trre2g05891 112 SUPERFAMILY Nucleic acid-binding proteins 5 99 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05891 Trre-Chr2 64509680 64510246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05891 1 106 Core DNA Replication Machinery Family AT3G52630 59.434 8.35e-42 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05891 K10740 - gmx:100781484 159.844