Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05889 ATGGGATCTGAAGCTATGGTTCCAGAATGGGCATCAGAGCCTTGTATAATGGGAATTGACGAAGCTGGAAGAGGCCCTGTTCTTGGTCCTATGGTCTACGGTGCTCTTTACTGTCCTCTCTCCTACCAGAACACCCTTGCTACTCTCAGTTTCGCAGATTCTAAGACACTGAAAGAAGAGAAGAGGGAAGAATTATTTGAAACTTTGAAAACCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCTAAGGAACTCTCTGCTAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGATTCTGCCATGGGCCTTGTTGATAGGGTGCTCAAAATGGGTGTGCTTCTAACTGAGGTTTTTATTGATACAGTTGGAGATCCGGGGAAATATGAGACAAAGCTTTCTAAAAATTTTCCATCTATTAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCCGTTGTCAGTGGTGCAAGCATAGTTGCAAAGGTCACAAGAGACCGAGCTGTGAGAGAATGGGTGCTTGATGAGACTGCTGATAACATGCACAGGAATTTCGGCTCTGGATATCCTGGAGATCCTGCAACCAAGTCTTGGCTAGAACATCACAAACATTCTATCTTTGGTTTTCCAACATTGGTCCGGTTTAGTTGGGGAACTTGCAGCTCTTATTTTAAAGGTGGTGCTGAAGTCTTATGGGAGTCTGACTTGGATGAAGATGGTGGCAGCAATAATAATGGGAAGCGACAATTGAAATTAAAAAATATGGGTTTCACCACATCCAAGAAGAGAAGTGAAGAAATAGAATCAAGTGGCAAAGGGCGTTCTAGGTTTTTTCAGGCTCGGAAACTTGAGCACCTCACTCATTTCTAA 891 0.4209 MGSEAMVPEWASEPCIMGIDEAGRGPVLGPMVYGALYCPLSYQNTLATLSFADSKTLKEEKREELFETLKTNDSIGWAVDVIDPKELSAKMLKKNKINLNEISHDSAMGLVDRVLKMGVLLTEVFIDTVGDPGKYETKLSKNFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAVREWVLDETADNMHRNFGSGYPGDPATKSWLEHHKHSIFGFPTLVRFSWGTCSSYFKGGAEVLWESDLDEDGGSNNNGKRQLKLKNMGFTTSKKRSEEIESSGKGRSRFFQARKLEHLTHF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05889 296 FunFam Ribonuclease 188 235 - -
Trre2g05889 296 MobiDBLite consensus disorder prediction 250 264 - -
Trre2g05889 296 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 283 IPR001352 GO:0003723|GO:0004523
Trre2g05889 296 Gene3D Ribonuclease hii. Domain 2 187 236 IPR023160 GO:0004523
Trre2g05889 296 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Trre2g05889 296 Gene3D - 2 186 IPR036397 GO:0003676
Trre2g05889 296 FunFam Ribonuclease 1 186 - -
Trre2g05889 296 SUPERFAMILY Ribonuclease H-like 15 231 IPR012337 -
Trre2g05889 296 MobiDBLite consensus disorder prediction 265 280 - -
Trre2g05889 296 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Trre2g05889 296 MobiDBLite consensus disorder prediction 242 280 - -
Trre2g05889 296 NCBIfam ribonuclease HII 16 229 IPR004649 GO:0004523|GO:0016070
Trre2g05889 296 CDD RNase_HII_eukaryota_like 17 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05889 Trre-Chr2 64501672 64504650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05889 1 296 Core DNA Replication Machinery Family AT2G25100 66.554 2.86e-152 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05889 K10743 - gmx:100779875 508.834