LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g05878	ATGTATCAGAAGACAATCACTATGGCTACGGCCGCTGCCGCCACAATGCAGTGGCCAACTCAGTGGACTCGTGAAGACGTCAAGATTTTCGAGAGAGCTCTTGTGATGGTGCCGGAGGATTTACCTAACCGGTGGGAGAAGATTGCCGAACAAGTTCCCGGTAAGTCAGCGGCGGAAGTGAGGGATCACTATGAGGATTTGGTTCATGAAATTTTGGAAATTGAATCTGGTCGGGTTGAGGTTCCGGATTATCCTGATGACTTGGTTGAGAAGAGGAAGAAGAAGTTAGGAAGACCATGGACCGAAGATGAACATAAGCGGTTTCTTGCTGGGCTTGAGAAATATGGGAAAGGAGATTGGAGAAGCATTTCAAGAAATTTTGTTGTGACGAAAACACCAACTCAGGTAGCAAGCCATGCTCAGAAGTACTTTATTCACAGCCAACAAAAGAGTTTCATGAAGAATAAAGAGAGGAAAAGATCAAGTATTCATGACATTACATTGGGAGATAGTAACTCAGCTCAGGTGCCTATTGATCGGAACTTTGTTCCTTCTTCCGGTGTTGGTTCATTGCAACAGCCTCAAGGAATGCATTATTATCCCTCAAACAGTTTACAAGATCAAATGGGTTTATTTGGACATTCAAACTATGGATTTTAA	660	0.4333	MYQKTITMATAAAATMQWPTQWTREDVKIFERALVMVPEDLPNRWEKIAEQVPGKSAAEVRDHYEDLVHEILEIESGRVEVPDYPDDLVEKRKKKLGRPWTEDEHKRFLAGLEKYGKGDWRSISRNFVVTKTPTQVASHAQKYFIHSQQKSFMKNKERKRSSIHDITLGDSNSAQVPIDRNFVPSSGVGSLQQPQGMHYYPSNSLQDQMGLFGHSNYGF	219

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g05878	219	SUPERFAMILY	Homeodomain-like	20	75	IPR009057	-
	Trre2g05878	219	SUPERFAMILY	Homeodomain-like	93	148	IPR009057	-
	Trre2g05878	219	CDD	SANT	22	68	IPR001005	-
	Trre2g05878	219	ProSiteProfiles	Myb-like domain profile.	22	68	IPR001005	-
	Trre2g05878	219	Pfam	Myb-like DNA-binding domain	21	66	IPR001005	-
	Trre2g05878	219	Pfam	Myb-like DNA-binding domain	99	144	IPR001005	-
	Trre2g05878	219	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	20	198	IPR043363	-
	Trre2g05878	219	ProSiteProfiles	Myb-like domain profile.	92	144	IPR001005	-
	Trre2g05878	219	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	92	148	IPR017930	-
	Trre2g05878	219	FunFam	Transcription factor SRM1	14	81	-	-
	Trre2g05878	219	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	97	146	IPR006447	GO:0003677
	Trre2g05878	219	FunFam	transcription factor MYB1R1	98	149	-	-
	Trre2g05878	219	CDD	SANT	99	144	IPR001005	-
	Trre2g05878	219	ProSiteProfiles	SANT domain profile.	95	148	IPR017884	-
	Trre2g05878	219	Gene3D	-	17	81	-	-
	Trre2g05878	219	Gene3D	-	98	149	-	-
	Trre2g05878	219	SMART	sant	96	146	IPR001005	-
	Trre2g05878	219	SMART	sant	18	70	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g05878	Trre-Chr2	64428422	64429383	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Trre2g05878		Myb_DNA-binding	1.9e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g05878	-		-	gmx:548010	265.003