Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05877 ATGTATCAGAAGACAATTGCCATGGCAAACGCCGCCACCGCCGCCACAACGCGGTGGCCGAGTCAGCCAACTCAGTGGACTCGTGAAGACGACAAGCTTTTCGAGCGAGCTCTTTTGATTGTGCCGGAGGATTTACCTAATCGGTGGGAGAATATCGCCGAACAAGTTCCTGGTAAGTCGGTGGTGGAAGTGAGGGATCACTATGAAGATTTGGTTCATGATGTTTTGGAAATTGATTCGGGTCGGGTTGAGGTTCCGAGCTATCCTGATGACTTGGCGGTGAGTGGTGGCGGTGGATTATCTGATTGGGATTCTTCGAATCAAATATCGTTTGGTTCGAAAACTAGACATAGTGATAACGAGAGGAAGAAAGGGACACCATGGACTGAAGAAGAACACAGGCTGTTTCTTGTTGGGCTTACCACATATGGCAAAGGAGATTGGAGAAGCATTTCAAGAAATGTTGTTGTGACAAGAACACCAACACAAGTAGCTAGCCATGCTCAAAAGTACTTTCTTCGCCAAAGTGCGGTGAAGAAAGAGAGGAAAAGATCAAGTATTCACGACATTACATCGGTAGACACTAATAAAGCACAGGTGCCTATTGATCAGAATTGGGTTCCTCCTCCTGGTGGTCAGCCTCAACAAAATCATCATTATCCCTCGAACAATTTGCATGATCAAATGGGTTCATTTGGGTATTCAAACTATGGATTTTAA 720 0.4542 MYQKTIAMANAATAATTRWPSQPTQWTREDDKLFERALLIVPEDLPNRWENIAEQVPGKSVVEVRDHYEDLVHDVLEIDSGRVEVPSYPDDLAVSGGGGLSDWDSSNQISFGSKTRHSDNERKKGTPWTEEEHRLFLVGLTTYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQSAVKKERKRSSIHDITSVDTNKAQVPIDQNWVPPPGGQPQQNHHYPSNNLHDQMGSFGYSNYGF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05877 239 Gene3D - 126 178 - -
Trre2g05877 239 CDD SANT 26 72 IPR001005 -
Trre2g05877 239 FunFam transcription factor MYB1R1 126 177 - -
Trre2g05877 239 NCBIfam myb-like DNA-binding domain, SHAQKYF class 123 175 IPR006447 GO:0003677
Trre2g05877 239 SMART sant 22 74 IPR001005 -
Trre2g05877 239 SMART sant 124 174 IPR001005 -
Trre2g05877 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 176 IPR017930 -
Trre2g05877 239 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 227 IPR043363 -
Trre2g05877 239 Gene3D - 20 85 - -
Trre2g05877 239 ProSiteProfiles SANT domain profile. 123 176 IPR017884 -
Trre2g05877 239 ProSiteProfiles Myb-like domain profile. 26 72 IPR001005 -
Trre2g05877 239 CDD SANT 127 172 IPR001005 -
Trre2g05877 239 FunFam Transcription factor SRM1 20 85 - -
Trre2g05877 239 SUPERFAMILY Homeodomain-like 24 80 IPR009057 -
Trre2g05877 239 SUPERFAMILY Homeodomain-like 122 176 IPR009057 -
Trre2g05877 239 MobiDBLite consensus disorder prediction 96 127 - -
Trre2g05877 239 Pfam Myb-like DNA-binding domain 25 70 IPR001005 -
Trre2g05877 239 Pfam Myb-like DNA-binding domain 127 172 IPR001005 -
Trre2g05877 239 ProSiteProfiles Myb-like domain profile. 120 172 IPR001005 -
Trre2g05877 239 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05877 Trre-Chr2 64423917 64425393 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g05877 Myb_DNA-binding 2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05877 - - gmx:547481 359.762