LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g05872	ATGCTTCTTCCTATGAGCTGCATTCTTTTAATGTCTCTATTATTATTCACTTCATTTTCACCACAAATCAAAGCTACTAAAACTATCTCAAATCTCACTTTACCCTACCAACATCCTTACCCTGAATCTGTGGTTCATGAACTTCAACAGAAAATCAATGTATCACTTTCTAGAAGAGAACTACTCGGAAAAGACCAAGGTTCTTGTTTAACAGGAAACCCAGTCGACGATTGTTGGCGATGCGATACAAATTGGGCAGAAAATCGTCAGAAGTTAGCAGAATGTGGAATTGGATTCGGACGCGCTGCCATGGGAGGTAAAAACGGTCAGATCTACATCGTAACAGATTCCTCCGATAAAGACCCAGCAAATCCAATTCCAGGAACACTCCGTCACGCCGTAATTCAAGATGAACCACTTTGGATAATCTTCGCCGCCGACATGACAATAAACCTCCGTCATGAACTAATCTTCAATTCATTCAAAACCGTCGACGGCCGTGGCGCAAATGTTCAAATCACCGGTCACGGTTGCATCACACTACAATACATCTCAAATATAATAATCCACAATATCCATGTTCATCACTGTAAACCATCGGGTAACACTAACATACGGGCGAGTCCAACGCATGTTGGATTCAGAGGAATATCAGACGGTGATGGTATATCAATATTCGGTTCTAGAAACATCTGGATCGATCATTGCTCGCTTTCTTATTGTACTGATGGTTTGATTGATGCTATTATGGGTTCAACTGCAATAACAATTTCGAATAATCATTTTGCACATCATGATGAAGTTATGTTATTAGGTCATAATGATAAGTATAGTCCTGATAAAGGAATGCAAGTTACGATTGCGTTTAATCACTTTGGTCAAGGACTTATTCAAAGAATGCCAAGGTGTAGACTTGGTTATATTCATGTTGTTAATAATGATTTTACTCAATGGGAAATGTATGCTATCGGAGGTAGTGCTAATCCTACTATTAACAGTCAAGGTAACCGTTACACCGCTCCTTCCGATCCAAATGCTAAAGAGGTGACAAAGCGCGTGGATACGGATGATAAAGAATGGAGTGGTTGGAATTGGAGGACAGATGGGGATATAATGGTAAATGGTGCATTCTTTGTACCGTCTGGGGCGGAGATGAGTGCGGAGTATGCGGAGGCGTCTAGCGTGCAACCGAAGCCCGTCGTGCAAATTGATCAGCTCACCATGTACTCCGGTGTTTTCGGTGATCCCAGGGATAATGGAGATATATATCCCGGTTTCAACGGTGGTGGGACCACAACTGGAGCCTCTAGCAAGGGTTACAATGGGAATGGGGGGTCCAGTAGTAGTGACGATGGAGACTTCTTTGGGATGATATTCAAAGGTAGTAGCAGCCAAGCAGCACCGCTAGCACCTTACTCATCAATTGTATTTGTTTCAACTTTTTTGTCTCTTTTAATTATTTTTATTTTGGACACTACCACCAACTATGATATTCTATTATGA	1503	0.4152	MLLPMSCILLMSLLLFTSFSPQIKATKTISNLTLPYQHPYPESVVHELQQKINVSLSRRELLGKDQGSCLTGNPVDDCWRCDTNWAENRQKLAECGIGFGRAAMGGKNGQIYIVTDSSDKDPANPIPGTLRHAVIQDEPLWIIFAADMTINLRHELIFNSFKTVDGRGANVQITGHGCITLQYISNIIIHNIHVHHCKPSGNTNIRASPTHVGFRGISDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDKGMQVTIAFNHFGQGLIQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVDTDDKEWSGWNWRTDGDIMVNGAFFVPSGAEMSAEYAEASSVQPKPVVQIDQLTMYSGVFGDPRDNGDIYPGFNGGGTTTGASSKGYNGNGGSSSSDDGDFFGMIFKGSSSQAAPLAPYSSIVFVSTFLSLLIIFILDTTTNYDILL	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g05872	500	SMART	amb_all	147	344	IPR002022	-
	Trre2g05872	500	Pfam	Pectate lyase	155	336	IPR002022	-
	Trre2g05872	500	Gene3D	-	72	414	IPR012334	-
	Trre2g05872	500	PANTHER	PECTATE LYASE 18-RELATED	36	413	IPR045032	GO:0030570
	Trre2g05872	500	SUPERFAMILY	Pectin lyase-like	67	385	IPR011050	-
	Trre2g05872	500	PRINTS	Pollen allergen Amb family signature	299	318	IPR018082	-
	Trre2g05872	500	PRINTS	Pollen allergen Amb family signature	392	415	IPR018082	-
	Trre2g05872	500	PRINTS	Pollen allergen Amb family signature	95	112	IPR018082	-
	Trre2g05872	500	PRINTS	Pollen allergen Amb family signature	321	340	IPR018082	-
	Trre2g05872	500	PRINTS	Pollen allergen Amb family signature	119	144	IPR018082	-
	Trre2g05872	500	PRINTS	Pollen allergen Amb family signature	219	240	IPR018082	-
	Trre2g05872	500	PRINTS	Pollen allergen Amb family signature	155	171	IPR018082	-
	Trre2g05872	500	PRINTS	Pollen allergen Amb family signature	363	387	IPR018082	-
	Trre2g05872	500	FunFam	Pectate lyase	72	414	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g05872	Trre-Chr2	64345949	64351399	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g05872	25	419	Polysaccharide Lyase	AT3G54920	66.259	0.0	570

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g05872	K01728		-	gmx:100808438	788.489