Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05861 ATGCAAAACTTCAACACAGATCAATCAGATTCACCACTCTATTCTCACTCTTCCTTTTTGCTTCGGGGAGATGAACCCTTCCCCAATCTATATCCAACGCGTTTCTTTGATCCTCAACTTTCATTTCAACACCACCACCATGCTTTTGATTTAAGTTCTGTGTTTGGTGCAAAGTCTAACAATGTTGCTGTTGTTGCAAGTAACTTGCAGTACGGAACATTCAACAATTGTAACCTTGGTTCAGCTTCTTCAGCTATGGAAGATAACAGTCAAAAGACTGAAGATACTTCAACAGAAGATAATATTGACATTGATCATAAAAACAACCAATGTTTCTCTAATGTGTCTGGGTGCAATGCTGTTGGAAACAAAGCTCTTGTAGATGTTGACTCCAAGGATCAATATAATAGTACTAAGGATAAAACTGAGGAGCAAAAGGCTCTTCGCCGGCTGGTGCAGAACCGCGAGGCTGCAAGGAAAAGTCGGTTAAGGAAAAAGGCATATGTGCAGCAATTGGAGAACAGTCGACTTAGGCTTGCTCAATTAGAGCAAGAGCTTCAACAAGTACATCAGCAGGGTGTATTTGTTGCAAATGGAGTTGCAGCGGATCGTGGTCATTCAGTTGTTGGAAACGGTGCATTAGCATTTGATATGGACTATGCCCGTTGGGTTGACGAACATCAACGATTAATCAATGACATAAGATTAGCTATAAATTCACAAATCGGCGATAATGAACTGCATCTTCTTGTTGATGGTGTCATGACTCATTATGATGAATTATACAAGTTGAAGAGTATAGGTGCAAAGGCTGATGTATTTCACATACTTTCTGGGTTGTGGAAAACACCTGCAGAAAGATGTTTCATGTGGCTTGGTGGATTCCGTTCATCTGAACTTCTCAAGATAGTTAGAAACCACCTTGAGGCGTTAACGGATTCGCAGTTGATGGCGATCTACAATCTGCAGCATTCTTCTCAGCAGGCTGAAGATGCATTATCTCAAGGGATGGAAGCATTGCAACAATCTCTTACAGAAACACTTTCCTCTACCTCTATTGGATCTGGAAATGTTGCCGAGTACATGGGCCAAATGGCCATTGCAATGACCAAACTTGCCACACTAGAGACTTTCATTCATCAGGCTGATCTCTTGAGGCAACAAACACTGCAACAGATGAATCGAATTTTGACTGCGCGCCAAGCTGCTCGTGCTCTCCTTGTCATTAATGATTTCATTTTGCGAATTCGAGCACTCAATTCATTATGGTTAGCATGTCCTAAAGAATACTAA 1293 0.413 MQNFNTDQSDSPLYSHSSFLLRGDEPFPNLYPTRFFDPQLSFQHHHHAFDLSSVFGAKSNNVAVVASNLQYGTFNNCNLGSASSAMEDNSQKTEDTSTEDNIDIDHKNNQCFSNVSGCNAVGNKALVDVDSKDQYNSTKDKTEEQKALRRLVQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQQVHQQGVFVANGVAADRGHSVVGNGALAFDMDYARWVDEHQRLINDIRLAINSQIGDNELHLLVDGVMTHYDELYKLKSIGAKADVFHILSGLWKTPAERCFMWLGGFRSSELLKIVRNHLEALTDSQLMAIYNLQHSSQQAEDALSQGMEALQQSLTETLSSTSIGSGNVAEYMGQMAIAMTKLATLETFIHQADLLRQQTLQQMNRILTARQAARALLVINDFILRIRALNSLWLACPKEY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05861 430 Coils Coil 165 192 - -
Trre2g05861 430 Coils Coil 141 161 - -
Trre2g05861 430 PANTHER TRANSCRIPTION FACTOR TGA9 86 429 - -
Trre2g05861 430 ProSiteProfiles DOG1 domain profile. 213 426 IPR025422 GO:0006351|GO:0043565
Trre2g05861 430 Gene3D - 146 193 - -
Trre2g05861 430 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 149 164 IPR004827 GO:0003700|GO:0006355
Trre2g05861 430 MobiDBLite consensus disorder prediction 83 102 - -
Trre2g05861 430 SUPERFAMILY Leucine zipper domain 146 190 IPR046347 GO:0003700|GO:0006355
Trre2g05861 430 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 144 188 IPR004827 GO:0003700|GO:0006355
Trre2g05861 430 Pfam bZIP transcription factor 143 185 IPR004827 GO:0003700|GO:0006355
Trre2g05861 430 Pfam Seed dormancy control 231 305 IPR025422 GO:0006351|GO:0043565
Trre2g05861 430 SMART brlzneu 142 213 IPR004827 GO:0003700|GO:0006355
Trre2g05861 430 FunFam BZIP family transcription factor 145 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05861 Trre-Chr2 64225866 64228979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05861 3 429 bZIP Transcription Factor Family AT1G68640 51.572 8.02e-144 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre2g05861 DOG1 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05861 K14431 - gmx:100775783 562.377