Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05852 ATGAATCAACCAATACCCGAGAGAGTGTTTGAGGACCGAAACGACGAAGAATGTTATCTTTGTAAACTTGGAGGAGACATTCTTTGTTGTGACTGTTGTCCGTCATCATTCCACAAAGAATGCTTGGGCATACCAGAGCCACAAAGTGAAAACTGGTACTGCCATTGGTGCAATTGTAAATTTTGTGGAGAATTTGAAGAAAGAGAAACTACAAATAATCCCAAATATGGACGTTTGCTAGTCTCTTATCGTTCGTGTAGGAGAAAATATCACATAGCTTGTGTTGATAACATCGATGATGAGACGGATCATTTCAATCGTGCATTCATATGTGGAAAAAAATGTTCAAGAGGTTATGGAGGCTACACGATTGTGGTTGCACGTGAAAACACCGGTGGTGTCGGTGGCTCTAAAGTTGAATTTCACGAGAGAGATAGAGATAGCGAGAGAGATGGAGAGAGAGACGCGACAGAGAAATAG 480 0.4125 MNQPIPERVFEDRNDEECYLCKLGGDILCCDCCPSSFHKECLGIPEPQSENWYCHWCNCKFCGEFEERETTNNPKYGRLLVSYRSCRRKYHIACVDNIDDETDHFNRAFICGKKCSRGYGGYTIVVARENTGGVGGSKVEFHERDRDSERDGERDATEK 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05852 159 PANTHER PHD FINGER PROTEIN 12 10 119 IPR042163 GO:0003714|GO:0045892
Trre2g05852 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 78 IPR013083 -
Trre2g05852 159 MobiDBLite consensus disorder prediction 138 159 - -
Trre2g05852 159 ProSiteProfiles Zinc finger PHD-type profile. 15 60 IPR019787 -
Trre2g05852 159 SMART PHD_3 17 58 IPR001965 -
Trre2g05852 159 SMART PHD_3 59 116 IPR001965 -
Trre2g05852 159 ProSitePatterns Zinc finger PHD-type signature. 18 57 IPR019786 -
Trre2g05852 159 SUPERFAMILY FYVE/PHD zinc finger 10 63 IPR011011 -
Trre2g05852 159 MobiDBLite consensus disorder prediction 133 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05852 Trre-Chr2 64182860 64185929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05852 12 127 PHD Transcription Factor Family AT5G36670 38.136 8.49e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05852 - - psat:127129048 140.584