Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05851 ATGTCACATCCATCGACAGAAATTCGTTCCCATAACTCACCTTCTTCTCGATCACCCTTATTTCCAATCCCACGTACCAGAAAGTTTGACAATGAGGTTCTTAGGAGTTATATACAAATATCATCTTCTTCAACAGATGCTGCATTCGCTGCTAGAAAAGAACTTGCAAGCTGCGGATGGTCAAAAACGATGGTTAACGGTACAATTTACTATTCATCTCCCAAAGATTCCGTAAAAAGAACCTTACTCCAAGCATGTTCTGTTGAAATGGCTAAAGAACATCGTCAAGATCCAGTTAAAGACCGCAAAGAAGAACAGCTTATAGAACGTGATTTGGCATTGGAAGCAAAGGTTGAAGAACAAGATTGTGCTAAAGAGGAAGAAAGCCTTAAAGAACAACATTCAGTAATGGAAAAACTTGTTAAAGAGGAAGAGGACTTAACTCAGATATGCCGGCTATGTAAAGTTTCATATGACTCAAGAGGCAGTATCATGCAGACAGGTTATTGTTCGATAACTTGCGAAGTCCTTTTTAACCATTTCGAATATCAGCTGATGAAGCCGGTTGAAGTCTATTGCGGTCTCGATTTTCATGTTATGAGAAACCAAAACGTACCACGGACAGATCAAAAAAAAGAGTTCATAGAAGCTGCTAAATTAATCGGTAAAACATTCGGTGATGAACTGACTAATGGGCTGATTTACGACCATAACTTCTATGTCGCTTCTCTTAGGGTGAACAATATGACGACTGCAGCCTTGCTGTTTAAGATACATCCAAACGGAGATCCGATTTTTAGTGAAATTCCCCTTGCAGCAACTGAGAAAAATAACCACCGCAGAGGCTACATGAAGATTTTGATGGGGAAGTTTGAAAATTTTTTAAGAAAATTAGGAGTAGGCAAAATGGTTCTGCCGTCTATTAAGGATGCTCTGTGGATCTGGATTTTCCTTCTTTCTAATGGGGATAAGGCTCATGCTGTAAAAATGAATCAACCAATACCCGAGAGAGTGTTTGAGGACCGAAACGACGAAGAATGTTATCTTTGTAAACTTGGAGGAGACATTCTTTGTTGTGACTGTTGTCCGTCATCATTCCACAAAGAATGCTTGGGCATACCAGAGCCACAAAGTGAAAACTGGTACTGCCATTGGTGCAATTGTAAATTTTGTGGAGAATTTGAAGAAAGAGAAACTACAAATAATCCCAAATATGGACGTTTGCTAGTCTCTTATCGTTCGTGTAGGAGAAAATATCACATAGCTTGTGTTGATAACATCGATGATGAGACGGATCATTTCAATCGTGCATTCATATGTGGAAAAAAATGTTCAAGAGGGGCCTAG 1347 0.3927 MSHPSTEIRSHNSPSSRSPLFPIPRTRKFDNEVLRSYIQISSSSTDAAFAARKELASCGWSKTMVNGTIYYSSPKDSVKRTLLQACSVEMAKEHRQDPVKDRKEEQLIERDLALEAKVEEQDCAKEEESLKEQHSVMEKLVKEEEDLTQICRLCKVSYDSRGSIMQTGYCSITCEVLFNHFEYQLMKPVEVYCGLDFHVMRNQNVPRTDQKKEFIEAAKLIGKTFGDELTNGLIYDHNFYVASLRVNNMTTAALLFKIHPNGDPIFSEIPLAATEKNNHRRGYMKILMGKFENFLRKLGVGKMVLPSIKDALWIWIFLLSNGDKAHAVKMNQPIPERVFEDRNDEECYLCKLGGDILCCDCCPSSFHKECLGIPEPQSENWYCHWCNCKFCGEFEERETTNNPKYGRLLVSYRSCRRKYHIACVDNIDDETDHFNRAFICGKKCSRGA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05851 448 SUPERFAMILY FYVE/PHD zinc finger 335 387 IPR011011 -
Trre2g05851 448 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g05851 448 ProSitePatterns Zinc finger PHD-type signature. 347 386 IPR019786 -
Trre2g05851 448 SMART PHD_3 346 387 IPR001965 -
Trre2g05851 448 SMART PHD_3 388 445 IPR001965 -
Trre2g05851 448 ProSiteProfiles Zinc finger PHD-type profile. 344 389 IPR019787 -
Trre2g05851 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 336 405 IPR013083 -
Trre2g05851 448 PANTHER PHD FINGER PROTEIN 12 337 445 IPR042163 GO:0003714|GO:0045892
Trre2g05851 448 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05851 Trre-Chr2 64176819 64187115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05851 341 444 PHD Transcription Factor Family AT5G36670 42.453 8.40e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05851 - - psat:127129048 137.117