Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05847 ATGGGTCTCCTTCAAATCACAAAAAAATCAATCTTTTTCACTCTTTTTGCTATACTCATTCCAATAATTACTACAAAACTCTTTTCTTCATATTCATCTCTATCAACCTTAATTGCTAGTGTCTCTCTCATAATCTTATTATCATACATATACTTAACTCATTCCAAGAAAAATTCTTCACCTCCAAGTCCTTTTTCTGTTCCTATATTTGGAAATTGGTTTCAAGTTGGCAATGATCTTAATCATCGAATTCTTGCAACCATGTCACAAACTTATGGATCACTTTTCCTACTCAAACTTGGTTCCAAGAACTTGGTTGTTGTCTCTGATCCAAACCTTGCAACACAAGTTCTTCATTCACAAGGAGTCGAATTCGGTTCTCGTCCTCGTAATGTTGTCTTTGATATCTTCACTGGTAATGGACAAGACATGGTTTTCACTGTCTATGGTGATCATTGGCGTAAAATGCGAAGAATCATGACATTGCCATTTTTCACTAACAAAGTTGTGAATAATTATAGTAACATGTGGGAACAAGAGATGGATTTGGTTGTGAAAGATCTTAAAGCTAATGAGATTGTTAAAAGTGAAGGGATTGTTATCAGAAAACGTCTTCAATTGATGTTGTATAATATCATGTATAGAATGATGTTTGATTCCAAATTTGAGTCTCAAGAAGATCCTTTGTTCATTCAAGCTACAAGGTTTAACTCTGAGAGAAGCCGTTTGGCACAGAGTTTTGAGTATAATTATGGTGATTTTATACCTTTGCTAAGGCCATTTTTGAGAGGGTACCTTAACAAGTGCAAAGACTTGCAAACTAGGAGGCTTGCATTTTTCAACAACTACTTTATTGAGAAGAGAAGAAAAATAATGGAAGCTAATGGGGACAAGCATGAGATAATATGTGCAATTGATCACATAATAGATGCAGAGATGAAAGGAGAAATAAGTGAAGAGAATGTCACATACATAGTTGAAAACATAAACGTTGCTGCAATAGAGACAACACTATGGTCAATGGAATGGGCAATAGCAGAGTTAGTGAATCATCCAAAAGTACAGACTAAAATACGCGACGAGATATCAGAAGTGCTTAAAGGTGAACAAGTAACAGAATCAAATCTAAACAAATTACCATATTTACAAGCCACATTGAAAGAAATATTAAGATTGCATACACCAATACCACTATTAGTACCTCACATGAACCTTGAAGAGGCTAAGTTAGGAGAGTACACTATTCCTAAAGAGTCTAAAGTAGTTGTTAATGCATGGTGGCTTGCAAATAATCCATTATGGTGGGAAAAACCAGAGGAGTTTAGGCCAGAGAGATTTTTGGAAGAGGAAAATGGAATTGATGCTGTTGCTGGTGGAGGGAAAGTTGATTTTAGATTTGTGCCATTTGGTGTTGGAAGGAGAAGTTGTCCTGGAATTATACTTGCATTGCCAATATTGGGATTGGTTATTGCAAAATTGGTATCAAATTTTGAGATGAATGGTCCAAATGGAACTAAGATTGATGTTAGTGAAAAAGGTGGACAATTTAGTTTACACATTGCTAATCATTCCACTGTTTTGTTCAATCCAATTCATTAG 1599 0.3515 MGLLQITKKSIFFTLFAILIPIITTKLFSSYSSLSTLIASVSLIILLSYIYLTHSKKNSSPPSPFSVPIFGNWFQVGNDLNHRILATMSQTYGSLFLLKLGSKNLVVVSDPNLATQVLHSQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVNNYSNMWEQEMDLVVKDLKANEIVKSEGIVIRKRLQLMLYNIMYRMMFDSKFESQEDPLFIQATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQTRRLAFFNNYFIEKRRKIMEANGDKHEIICAIDHIIDAEMKGEISEENVTYIVENINVAAIETTLWSMEWAIAELVNHPKVQTKIRDEISEVLKGEQVTESNLNKLPYLQATLKEILRLHTPIPLLVPHMNLEEAKLGEYTIPKESKVVVNAWWLANNPLWWEKPEEFRPERFLEEENGIDAVAGGGKVDFRFVPFGVGRRSCPGIILALPILGLVIAKLVSNFEMNGPNGTKIDVSEKGGQFSLHIANHSTVLFNPIH 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05847 532 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 41 531 - -
Trre2g05847 532 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
Trre2g05847 532 FunFam Trans-cinnamate 4-monooxygenase 50 525 - -
Trre2g05847 532 Pfam Cytochrome P450 61 521 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 PRINTS E-class P450 group I signature 113 134 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 PRINTS E-class P450 group I signature 341 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 PRINTS E-class P450 group I signature 208 226 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 PRINTS E-class P450 group I signature 321 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 PRINTS P450 superfamily signature 467 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 PRINTS P450 superfamily signature 332 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 Gene3D Cytochrome P450 51 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05847 532 SUPERFAMILY Cytochrome P450 61 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05847 Trre-Chr2 64136772 64138894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05847 35 530 Monolignol Biosynthesis Gene Families AT2G30490 63.527 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05847 K00487 - gmx:100812188 823.157