Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05831 ATGATGATGGGTTCTAGAAAATCTAGAGCCAAACCAAGGCCTCAACCTTTGAAAGAATCCAAATTGATGACAAGAAATTTGCGCATAGTTTTTGATGATCCTGATGCAACTGATTCATCCGAAGATGAGTCAAACCAATCAACAAGAATCAGACGAAGTATCGTTGATATTCCGATGCCACCGGTTGTTTCTGCGGTATTATCTCAAAACAGTTCCTCCGAGAAGCCGAAGATTGCTACAAGGAAGAAAAAGACCTGTCTTTCACCACAAGCTCAAACCAAGAAGAAGGTTGTTCCATCAACAGCATCTGCTGCAGCAACAACAAGAAGGGGACAATCCTCTGCCAGATACCGAGGCGTTCGTATGCGAAAATGGGGGAAATGGGCCGCGGAGATTCGTGATCCATTCAAAGGTGCTAGAATCTGGTTGGGAACTTACAACACTGCTGAGGAAGCTTCTGAAGCTTATGAATCCAAAAGGCTTCAATTTGAAATGATGGAAGCTGAAATGGCTGCAGGAACACGCCTCAACCGTGTTTCTGGTTCTTCTGCTGCAGCCCGTCCAGCTACTAATGCTGCTAATGCGTCTATGTCGGAGAAATTCTCAACAACTACTGAAGAATCTCAGAGCTTATTCTCACATGGATCGCCTTCTTCCGTGCTTGAATTGGATACCGTAGCATCGTCCAATTTGATTGAGAAGGTTGATGTTCCATCGGTCAACAATGGTGCTGCTGCTGAAGACGAAGCGATTGAAATGGTGGCTTGTCAACTTGAAGAGCTAGAAATTCCAGATCTGAGTGTTTTGAACTTGCCTGAGCCACCGGTTGCTGCTGCAGAGAATCCTATTGGGACTGATCCCAATCTTGGTTTTGGATTCGATTTTGATCGGTTTAACATCGATAATTTTGAACTGGGTTATGATGACTTTGATGATGACCTTGGCGACTTAAGGGATCTTCACATTCATGGATTTGATGACAATGTGCCTAGTGAGCTTCCTGATTTTGATTTTGCTGCTGATGATGATGAATTTGCTGCATGGATTGATGAACCCCTCCAACACAACATGCCTTGTCCCAAAGTTTTGTAG 1092 0.4405 MMMGSRKSRAKPRPQPLKESKLMTRNLRIVFDDPDATDSSEDESNQSTRIRRSIVDIPMPPVVSAVLSQNSSSEKPKIATRKKKTCLSPQAQTKKKVVPSTASAAATTRRGQSSARYRGVRMRKWGKWAAEIRDPFKGARIWLGTYNTAEEASEAYESKRLQFEMMEAEMAAGTRLNRVSGSSAAARPATNAANASMSEKFSTTTEESQSLFSHGSPSSVLELDTVASSNLIEKVDVPSVNNGAAAEDEAIEMVACQLEELEIPDLSVLNLPEPPVAAAENPIGTDPNLGFGFDFDRFNIDNFELGYDDFDDDLGDLRDLHIHGFDDNVPSELPDFDFAADDDEFAAWIDEPLQHNMPCPKVL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05831 363 CDD AP2 115 156 IPR001471 GO:0003700|GO:0006355
Trre2g05831 363 Coils Coil 149 169 - -
Trre2g05831 363 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Trre2g05831 363 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Trre2g05831 363 Pfam AP2 domain 116 164 IPR001471 GO:0003700|GO:0006355
Trre2g05831 363 ProSiteProfiles AP2/ERF domain profile. 116 179 IPR001471 GO:0003700|GO:0006355
Trre2g05831 363 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 233 - -
Trre2g05831 363 MobiDBLite consensus disorder prediction 1 55 - -
Trre2g05831 363 Gene3D AP2/ERF domain 115 173 IPR036955 GO:0003700|GO:0006355
Trre2g05831 363 MobiDBLite consensus disorder prediction 67 94 - -
Trre2g05831 363 SMART rav1_2 116 170 IPR001471 GO:0003700|GO:0006355
Trre2g05831 363 SUPERFAMILY DNA-binding domain 116 163 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05831 Trre-Chr2 64000277 64001368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05831 25 360 AP2-EREBP Transcription Factor Family AT1G68550 31.389 1.27e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g05831 AP2 7.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05831 - - tpra:123900395 587.8