Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05821 ATGAGTTGTTCAAGTAAGAAAGCTGCAAACGCAGTTGGAGGCAAAACTGCTAGAGCTTGTGACAGTTGCATAACAAAGAGAGCACGTTGGTATTGTGCTGCTGATGATGCTTTTCTCTGTCAAGCTTGTGACTCTTCAGTTCATTCAGCTAATTCTTTAGCTAGAAGACATGAAAGAGTTCGTTTGAAAACCGCGTCGTATAAATCCACCGGTGACGATGAATTCAACAATTCCGGTCCTTTCTCCGGCTTCACTAAGAAAGCAAGAACACCGAGGCAGGGGAAACACAAATCATCGCCGAATAATGAACCGGCGAGGAATAATAATAATAATCCATTTCATCTTGTTCCAGAGATTGGTTTCGATGAAGTGAATTCACTTTCACATGATGAAAATGAGGAGCAACTTCTTTATAGGGTACCGATTTTCGATCCCTTTGTTGCTGAATTATGTAGTACTAGTCCTCCTTCAGTTGGTTCAAGTGAAGGAGGACCAGGAACTATAACTATTGCTTCTGCTACTTTCACTCCTGATGCTGAAAACATCAGGAGCGAAAGCAGATGTGGTGGTAACAATTATGAGATGGAAAGCTTTCACGGGCTTCTTCCATCTGATATTGAATTAGCCGAATTTGCAGCCGATGTTGAGAGTTTATTGGGTAGGGGACTAGAAAATGAGTGTATAGGGATGGAAGAGTTAGGATTGATTGATACAAAACATGAGAAGGAAGGGGAGTGGGAGTGTATTGGGAAGGTGAAGGAAGAAGGTGAAGAGAGCCATGAAGTTGTAGAGGTAGATAATATAGAGATGATGGGAAAAGAATCTTCATTTGAGTTGAATTTTGATTATGATGAATCTCATGAAACATGTGAAGAAGAGGTGAAGGGTAAGGTTGATTTGGATATAGAACAAAATGAAAATAATAATTGTAATAAGGGGAAGAGGAAAATATCTTTGCAGCTAGACTATGATGCAATAATCATTGCATGGGATAGCCAAAAGTGTCCATGGACTAATGGTGACAAACCAAATTTTGATGCTGATGAGTCCTGGCTTGATTGCATGGGAACTTATGGAACAGAGGTTCATTATCCTTATAGTGAATTTGGTGGATATGGATATCATCCAGTAATGGTAGATGGAGGAAGAGAGGCAAGAGTTTCAAGGTACAGAGAAAAGAGAAGAACAAGGTTGTTTTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGAAGATTTGTAAAGAGGGCTTCCTTTGCAGTTCCAACATTTCCTTTGTTAAAATAA 1314 0.3957 MSCSSKKAANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLKTASYKSTGDDEFNNSGPFSGFTKKARTPRQGKHKSSPNNEPARNNNNNPFHLVPEIGFDEVNSLSHDENEEQLLYRVPIFDPFVAELCSTSPPSVGSSEGGPGTITIASATFTPDAENIRSESRCGGNNYEMESFHGLLPSDIELAEFAADVESLLGRGLENECIGMEELGLIDTKHEKEGEWECIGKVKEEGEESHEVVEVDNIEMMGKESSFELNFDYDESHETCEEEVKGKVDLDIEQNENNNCNKGKRKISLQLDYDAIIIAWDSQKCPWTNGDKPNFDADESWLDCMGTYGTEVHYPYSEFGGYGYHPVMVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVPTFPLLK 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05821 437 MobiDBLite consensus disorder prediction 95 111 - -
Trre2g05821 437 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 426 - -
Trre2g05821 437 Pfam CCT motif 383 425 IPR010402 GO:0005515
Trre2g05821 437 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Trre2g05821 437 ProSiteProfiles CCT domain profile. 383 425 IPR010402 GO:0005515
Trre2g05821 437 SMART bboxneu5 15 62 IPR000315 GO:0008270
Trre2g05821 437 MobiDBLite consensus disorder prediction 69 84 - -
Trre2g05821 437 MobiDBLite consensus disorder prediction 69 111 - -
Trre2g05821 437 CDD Bbox1_BBX-like 19 62 - -
Trre2g05821 437 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05821 Trre-Chr2 63881181 63882607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05821 6 425 C2C2-CO-like Transcription Factor Family AT1G25440 45.890 4.84e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre2g05821 zf-B_box 9.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05821 - - psat:127098417 636.721